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Basic information

CohesinDB ID: CDBG00024732

Gene Symbol: AP001599.1

Ensembl ID: ENSG00000223563

Gene locus: chr21:26889375-26939742 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.2886 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.912
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,Liver,ARPE-19,RT-112,Skin-Fibroblast,K-562,HT-1197,Kelly,H1-hESC,HFF-hTERT,HAP1,PAEC,HeLa-S3,H1-Trophectoderm,H9-hESC,H1-Mesenchymal,H1-Mesendoderm,Olfactory

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI8649RQJ, 4DNFI3CFMRID, GSE95015, 4DNFIWZEN3FF, 4DNFIDJ2JZ7Q, 4DNFIE8E4ANZ, GSE108787, 4DNFIB7QTIMH, 4DNFIBN9K4V9, GSE103148, 4DNFI7H4II2V, ENCSR732QOH, 4DNFI6EIFUZI, 4DNFIBM714BP, ENCSR668RDP, GSE155380, 4DNFIV239W4L, GSE52457, 4DNFI3A3VYWU, 4DNFIM2BMJ33, Direct, 4DNFI6XD6JAQ, ENCSR386KHY, 4DNFI6JJQKFJ, ENCSR110JOO, 4DNFIFI6NIKJ, GSE105028, 4DNFIDBIEXI7, GSE58752

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000223563