Deatailed information for gene ENSG00000223662
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00024804
- Gene Symbol: SAMSN1-AS1
- Ensembl ID: ENSG00000223662
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Gene locus: chr21:14582201-14598303
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0790
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.971
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: GM12878,HFF-hTERT,HeLa-S3,H9-hESC,HUES64
- Related loop:
chr21:14275000-14300000~~chr21:14600000-14625000,
chr21:14450000-14475000~~chr21:14600000-14625000,
chr21:14500000-14525000~~chr21:14600000-14625000,
chr21:14558737-14560030~~chr21:14577684-14578910,
chr21:14600000-14625000~~chr21:14725000-14750000,
chr21:14600000-14625000~~chr21:14775000-14800000,
chr21:14600000-14625000~~chr21:15150000-15175000,
chr21:14600000-14625000~~chr21:15550000-15575000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFIXWCLD4M, Direct, GSE105028, ENCSR981FNA, GSE97394
- Cohesin-loop subunit: CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .