Browse_each

Basic information

CohesinDB ID: CDBG00024874

Gene Symbol: LINC00205

Ensembl ID: ENSG00000223768

Gene locus: chr21:45288049-45297806 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.4171 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.395
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,TAMR-MCF7,DU145,GM12892,K1,hTERT-HME1,Olfactory,Hepatocyte-H9,GM19239,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,LNCaP,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,ARPE-19,HCT-116,OCI-AML-3,Hep-G2,HT-1197,Kelly,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,U-937,SU-DHL-4,HUVEC,NPC-H9,RT-112,Skin-Fibroblast,CC-2551,HFF-hTERT,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: GSE43070, 4DNFITUOMFUQ, ENCSR794RDS, ENCSR852KQC, 4DNFIDSWKFF5, GSE103148, 4DNFIZ4F74QR, ENCSR350NJV, 4DNFIEYQ5ZIR, 4DNFIA6NSSBJ, ENCSR113OIR, ENCSR668RDP, 4DNFIL5K3MA1, 4DNFICEGAHRC, 4DNFIJ5DQZVK, ENCSR658RQQ, ENCSR299VMZ, 4DNFISPUVQHA, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, ENCSR000FDB, 4DNFI7XAZNNQ, ENCSR527RXH, GSE105028, ENCSR833CMG, 4DNFIBKZK63V, ENCSR033GUP, 4DNFIQWD8ZYD, 4DNFI3CFMRID, ENCSR662QKG, GSE118716, ENCSR499RVD, ENCSR146FPM, GSE155380, ENCSR587DSF, ENCSR452NHL, GSE80820, 4DNFIYWONU7A, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9ZWZ5BS, 4DNFIVJ3IIQL, 4DNFIFLJLIS5, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIH7TH4MF, 4DNFI5CGQ46V, GSE120294, 4DNFIPV5KFMK, ENCSR672RHL, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIF2D3TL9, 4DNFIFHU75I5, ENCSR444BAR, ENCSR123UVP, GSE165038, 4DNFIALNLR78, ENCSR386KHY, 4DNFIEJEFCAM, ENCSR393LOP, ENCSR255XYX, ENCSR404HWQ, 4DNFIE5TEYK7, ENCSR933UZH, 4DNFIRZA6EV6, 4DNFIMROE6N4, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFI6EIFUZI, 4DNFIBCIA62Q, GSE111537, ENCSR381DCY, ENCSR981FNA, ENCSR752QCX, ENCSR128RPG, 4DNFISTWNV9C, 4DNFIC3HAU11, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFIP71EWXC, 4DNFIHN2QSMX, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000223768