Deatailed information for gene ENSG00000223901

Check detailed explainations here

  • Basic information
  • CohesinDB ID: CDBG00024963
  • Gene Symbol: AP001469.1
  • Ensembl ID: ENSG00000223901
  • Gene locus: chr21:46220343-46225364 Strand: +
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction,
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.3625 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.347
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: HEK293T,IMR-90,H1-hESC,Motor-Neuron,HFF-hTERT,HFFc6,MCF7-FASR,SU-DHL-2,HeLa-S3,hTERT-HME1,H1-Mesenchymal,H1-Mesendoderm
  • Related loop: chr21:45325000-45350000~~chr21:46200000-46225000, chr21:45900000-45925000~~chr21:46200000-46225000, chr21:45950000-45975000~~chr21:46200000-46225000, chr21:46100000-46125000~~chr21:46200000-46225000, chr21:46224712-46227816~~chr21:46256001-46257726, chr21:46224751-46225933~~chr21:46639346-46640584, chr21:46226574-46227839~~chr21:46635152-46636811,
  • Cohesin-loop type: HiC,Direct,ChIAPET
  • Cohesin-loop study: GSE44267, ENCSR128RPG, ENCSR991JXX, 4DNFI8649RQJ, GSE52457, ENCSR866FWQ, 4DNFIBM714BP, 4DNFIWZEN3FF, GSE43070, Direct, 4DNFIMROE6N4, 4DNFIXWCLD4M, GSE118716, ENCSR852KQC, 4DNFIH7TH4MF
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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