Deatailed information for gene ENSG00000224100

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  • Basic information
  • CohesinDB ID: CDBG00025103
  • Gene Symbol: AP001630.1
  • Ensembl ID: ENSG00000224100
  • Gene locus: chr21:42964638-42965363 Strand: -
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.1217 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.838
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: HEK293T,GM12878,Hep-G2,TAMR-MCF7,H1-hESC,HFF-hTERT,HFFc6,MCF7-FASR,HeLa-S3
  • Related loop: chr21:10325000-10350000~~chr21:42950000-42975000, chr21:42575000-42600000~~chr21:42950000-42975000, chr21:42950000-42975000~~chr21:43175000-43200000, chr21:42950000-42975000~~chr21:43200000-43225000, chr21:42950000-42975000~~chr21:43275000-43300000, chr21:42950000-42975000~~chr21:43300000-43325000, chr21:42950000-42975000~~chr21:43750000-43775000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: GSE44267, 4DNFIQYQWPF5, 4DNFIBM714BP, ENCSR194SRI, 4DNFI2J1ODWB, 4DNFI5CGQ46V, Direct, 4DNFIMROE6N4, GSE118716, 4DNFIFLJLIS5, 4DNFI5SUHCGZ, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFICEGAHRC, 4DNFIIMZB6Y9
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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