Deatailed information for gene ENSG00000224141
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00025125
- Gene Symbol: MIR548XHG
- Ensembl ID: ENSG00000224141
-
Gene locus: chr21:18588868-18760320
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.0459
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: HEK293T,HFF-hTERT,HeLa-S3,H9-hESC,H1-Mesenchymal,H1-Mesendoderm
- Related loop:
chr21:17675000-17700000~~chr21:18600000-18625000,
chr21:18275000-18300000~~chr21:18725000-18750000,
chr21:18500000-18525000~~chr21:18600000-18625000,
chr21:18500000-18525000~~chr21:18625000-18650000,
chr21:18500000-18525000~~chr21:18700000-18725000,
chr21:18525000-18550000~~chr21:18625000-18650000,
chr21:18525000-18550000~~chr21:18650000-18675000,
chr21:18525000-18550000~~chr21:18750000-18775000,
chr21:18650000-18675000~~chr21:19550000-19575000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
GSE44267, GSE52457, 4DNFI3CFMRID, 4DNFIWZEN3FF, 4DNFIVJ3IIQL, Direct, 4DNFIE8E4ANZ, GSE105028, 4DNFIW8TIFI5
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .