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Basic information

CohesinDB ID: CDBG00025203

Gene Symbol: AP000697.1

Ensembl ID: ENSG00000224269

Gene locus: chr21:36698772-36701564 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = -0.1119 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.967
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,iPSC,H1-hESC,A-549,HFF-hTERT,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,Olfactory,HUES64

Cohesin-loop type: HiChIP,HiC,Direct

Cohesin-loop study: 4DNFI6CWNUFL, GSE118716, ENCSR499RVD, GSE120294, 4DNFIEYQ5ZIR, 4DNFI6EIFUZI, 4DNFIREVU1Z5, GSE97394, 4DNFIOUSETUP, 4DNFIIMZB6Y9, 4DNFISTWNV9C, 4DNFIBT4EAKN, Direct, 4DNFIEJEFCAM, ENCSR393LOP, 4DNFI9815EEJ, 4DNFIC3HAU11, 4DNFI5LCW273, GSE105028, 4DNFIDZT7PR8, 4DNFII84FBKM, 4DNFIVSCH2CH

Cohesin-loop subunit: SMC1,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000224269