Deatailed information for gene ENSG00000224421
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00025315
- Gene Symbol: ATP5MFP1
- Ensembl ID: ENSG00000224421
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Gene locus: chr21:36388877-36389112
Strand: -
- Gene type: processed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0060
FDR = 0.4499
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: GM12891,GM12878,NPC-H9,K-562,HT-1197,H1-hESC,DU145,MSLCL,HAP1,HeLa-S3,SU-DHL-2,H9-hESC,SU-DHL-4
- Related loop:
chr21:34350000-34375000~~chr21:36375000-36400000,
chr21:36125000-36150000~~chr21:36375000-36400000,
chr21:36140628-36142797~~chr21:36388297-36390535,
chr21:36140648-36142704~~chr21:36389208-36390546,
chr21:36140783-36142792~~chr21:36388547-36390538,
chr21:36140808-36142792~~chr21:36389186-36390767,
chr21:36140824-36142795~~chr21:36389196-36390710,
chr21:36140829-36142646~~chr21:36389162-36390561,
chr21:36140830-36142847~~chr21:36389185-36390513,
chr21:36140835-36142753~~chr21:36388314-36390557,
chr21:36140837-36142525~~chr21:36389208-36390500,
chr21:36140838-36142786~~chr21:36388412-36390522,
chr21:36150000-36175000~~chr21:36375000-36400000,
chr21:36152221-36154286~~chr21:36388878-36390620,
chr21:36152248-36154218~~chr21:36389196-36390710,
chr21:36200000-36225000~~chr21:36375000-36400000,
chr21:36250000-36275000~~chr21:36375000-36400000,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
ENCSR128RPG, 4DNFI3A3VYWU, GSE95015, ENCSR247RGI, ENCSR338WUS, ENCSR658RQQ, 4DNFIVJ3IIQL, ENCSR299VMZ, Direct, 4DNFIWZEN3FF, GSE105028, ENCSR386KHY, 4DNFIBN9K4V9, 4DNFIDBIEXI7, 4DNFIJWBWE41, ENCSR981FNA, ENCSR672RHL, 4DNFI7H4II2V, ENCSR452NHL
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .