Deatailed information for gene ENSG00000224541
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00025394
- Gene Symbol: AP001439.1
- Ensembl ID: ENSG00000224541
-
Gene locus: chr21:26158090-26175824
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = -0.0249
FDR = 0.0012
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.688
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MB157,DU145,Keratinocytes192627,Aorta,GM12892,K1,Spleen,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,GM19239,HEK293T,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,Pancreas,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,LNCaP,H1-Trophectoderm,H9-hESC,KU-19-19,NCI-H460,iPSC,Liver,REC-1,Hep-G2,HT-1197,H1-hESC,HCC1599,GM19238,HT-1376,Motor-Neuron,MSLCL,NaiveB,BMEC,HUES64,SU-DHL-4,HUVEC,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,Left-Ventricle,CC-2551,HFF-hTERT,HAP1
- Related loop:
chr21:24925000-24950000~~chr21:26150000-26175000,
chr21:25350000-25375000~~chr21:26150000-26175000,
chr21:25400000-25425000~~chr21:26150000-26175000,
chr21:25575000-25600000~~chr21:26150000-26175000,
chr21:25575000-25600000~~chr21:26175000-26200000,
chr21:25600000-25625000~~chr21:26150000-26175000,
chr21:25600000-25625000~~chr21:26175000-26200000,
chr21:25606813-25609539~~chr21:26168567-26171752,
chr21:25606813-25609564~~chr21:26168596-26171705,
chr21:25625000-25650000~~chr21:26150000-26175000,
chr21:25750000-25775000~~chr21:26150000-26175000,
chr21:25775000-25800000~~chr21:26150000-26175000,
chr21:25789502-25791503~~chr21:26168596-26171705,
chr21:25789567-25791545~~chr21:26168542-26171800,
chr21:25850000-25875000~~chr21:26175000-26200000,
chr21:25875000-25900000~~chr21:26150000-26175000,
chr21:25875000-25900000~~chr21:26175000-26200000,
chr21:25880592-25882759~~chr21:26168595-26171726,
chr21:25880643-25882866~~chr21:26169947-26171806,
chr21:25880719-25882754~~chr21:26168603-26171485,
chr21:25880755-25882952~~chr21:26168541-26171786,
chr21:25880762-25882939~~chr21:26168567-26172542,
chr21:25880770-25883137~~chr21:26168491-26171741,
chr21:25880785-25882961~~chr21:26168597-26171877,
chr21:25880794-25882895~~chr21:26168600-26171765,
chr21:25880795-25883103~~chr21:26168579-26171699,
chr21:25880806-25883113~~chr21:26168567-26171752,
chr21:25880813-25882766~~chr21:26170075-26171770,
chr21:25880821-25883172~~chr21:26168566-26171735,
chr21:25880831-25882882~~chr21:26168509-26171714,
chr21:25880854-25882845~~chr21:26170145-26171780,
chr21:25880871-25883139~~chr21:26168536-26171703,
chr21:25880878-25883186~~chr21:26169836-26171640,
chr21:25880913-25882748~~chr21:26169335-26171730,
chr21:25880959-25882727~~chr21:26168566-26171728,
chr21:25881105-25882920~~chr21:26168579-26171721,
chr21:25886689-25887960~~chr21:26168542-26171691,
chr21:25894856-25897119~~chr21:26168541-26171786,
chr21:25895002-25896873~~chr21:26168572-26171752,
chr21:25895048-25897116~~chr21:26168461-26171694,
chr21:25895145-25896737~~chr21:26169947-26171806,
chr21:25895183-25896791~~chr21:26168600-26171765,
chr21:25895184-25896849~~chr21:26168597-26171877,
chr21:25895199-25896667~~chr21:26170075-26171770,
chr21:25895223-25896749~~chr21:26170145-26171780,
chr21:25925000-25950000~~chr21:26150000-26175000,
chr21:25950000-25975000~~chr21:26150000-26175000,
chr21:25975000-26000000~~chr21:26150000-26175000,
chr21:26025000-26050000~~chr21:26150000-26175000,
chr21:26031848-26033090~~chr21:26168677-26171722,
chr21:26050000-26075000~~chr21:26150000-26175000,
chr21:26150000-26175000~~chr21:26325000-26350000,
chr21:26150000-26175000~~chr21:26375000-26400000,
chr21:26150000-26175000~~chr21:26425000-26450000,
chr21:26150000-26175000~~chr21:26525000-26550000,
chr21:26150000-26175000~~chr21:26550000-26575000,
chr21:26150000-26175000~~chr21:26700000-26725000,
chr21:26150000-26175000~~chr21:26800000-26825000,
chr21:26150000-26175000~~chr21:26825000-26850000,
chr21:26150000-26175000~~chr21:27500000-27525000,
chr21:26168536-26171703~~chr21:26715160-26718522,
chr21:26168542-26171691~~chr21:26714717-26718289,
chr21:26168542-26171800~~chr21:26715396-26718303,
chr21:26168566-26171735~~chr21:26715280-26718256,
chr21:26168567-26172542~~chr21:26715356-26718205,
chr21:26168579-26171721~~chr21:26714841-26717171,
chr21:26168586-26171752~~chr21:26715190-26718539,
chr21:26168591-26172572~~chr21:26715252-26718261,
chr21:26175000-26200000~~chr21:26375000-26400000,
chr21:26175000-26200000~~chr21:26675000-26700000,
chr21:26175000-26200000~~chr21:26700000-26725000,
chr21:26175000-26200000~~chr21:27500000-27525000,
chr21:26175000-26200000~~chr21:28725000-28750000,
chr21:26175000-26200000~~chr21:29075000-29100000,
chr21:26177658-26178878~~chr21:26715348-26718310,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
GSE95015, GSE43070, 4DNFIDJ2JZ7Q, ENCSR794RDS, 4DNFIBN9K4V9, ENCSR852KQC, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, ENCSR113OIR, 4DNFI9VXTBE2, ENCSR668RDP, GSE97394, 4DNFICEGAHRC, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, ENCSR658RQQ, ENCSR299VMZ, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFIK61ILGM, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, ENCSR527RXH, GSE105028, 4DNFIBKZK63V, ENCSR033GUP, 4DNFIQWD8ZYD, GSE87112, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, ENCSR499RVD, 4DNFIB7QTIMH, 4DNFIBXWIH8J, 4DNFIJWBWE41, 4DNFICSTCJQZ, GSE155380, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, GSE52457, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, 4DNFI9815EEJ, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, GSE84022, 4DNFIPV5KFMK, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, 4DNFIL9M97T2, ENCSR550JLK, 4DNFI3A3VYWU, 4DNFIM2BMJ33, 4DNFIYDBBSE3, ENCSR386KHY, 4DNFIEJEFCAM, ENCSR393LOP, GSE44267, GSE48592, ENCSR255XYX, ENCSR404HWQ, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, ENCSR933UZH, ENCSR094EIC, GSE58752, ENCSR507AHE, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR489OCU, 4DNFI6EIFUZI, ENCSR866FWQ, 4DNFII6AN691, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, ENCSR752QCX, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, ENCSR228TUX, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR247RGI, 4DNFI5LCW273, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .