Deatailed information for gene ENSG00000224598

Check detailed explainations here

  • Basic information
  • CohesinDB ID: CDBG00025435
  • Gene Symbol: RPS5P2
  • Ensembl ID: ENSG00000224598
  • Gene locus: chr21:34135431-34136071 Strand: -
  • Gene type: processed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction,
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.3381 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.543
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: MCF-7,RT-112,K-562,TAMR-MCF7,HT-1197,H1-hESC,HFF-hTERT,MCF7-FASR,H9-hESC
  • Related loop: chr21:33675000-33700000~~chr21:34125000-34150000, chr21:33975000-34000000~~chr21:34125000-34150000, chr21:34125000-34150000~~chr21:34225000-34250000, chr21:34125000-34150000~~chr21:34250000-34275000, chr21:34125000-34150000~~chr21:34325000-34350000, chr21:34125000-34150000~~chr21:34625000-34650000, chr21:34133133-34135105~~chr21:34242552-34244759, chr21:34133158-34135052~~chr21:34201091-34202966,
  • Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
  • Cohesin-loop study: 4DNFIE8T8JZ8, 4DNFIC3HAU11, ENCSR338WUS, Direct, GSE118716, 4DNFISPUVQHA, GSE105028, ENCSR386KHY, GSE155380
  • Cohesin-loop subunit: CTCF,Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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