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Basic information

CohesinDB ID: CDBG00025572

Gene Symbol: AP000704.1

Ensembl ID: ENSG00000224790

Gene locus: chr21:36966484-36975164 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.2404 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.518
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MB157,K1,hTERT-HME1,H1-Mesenchymal,H1-Mesendoderm,Hepatocyte-H9,MCF-7,HEK293T,GM12891,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,LNCaP,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,REC-1,ARPE-19,Germinal-Center-B,Hep-G2,HT-1197,H1-hESC,HT-1376,GM19238,Motor-Neuron,MSLCL,SU-DHL-4,NPC-H9,RT-112,Skin-Fibroblast,HFF-hTERT,HAP1

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI8649RQJ, 4DNFI3CFMRID, ENCSR662QKG, GSE95015, 4DNFIWZEN3FF, ENCSR194SRI, GSE43070, GSE116875, 4DNFIDJ2JZ7Q, GSE118716, 4DNFIE8E4ANZ, GSE108787, GSE116869, 4DNFI5SUHCGZ, ENCSR852KQC, GSE84022, GSE120294, ENCSR146FPM, 4DNFI7H4II2V, 4DNFIW8TIFI5, ENCSR350NJV, ENCSR732QOH, ENCSR113OIR, 4DNFIYD8LO9Z, ENCSR668RDP, ENCSR381DCY, GSE155380, ENCSR981FNA, 4DNFIV239W4L, ENCSR587DSF, ENCSR452NHL, ENCSR128RPG, GSE52457, 4DNFI3A3VYWU, ENCSR658RQQ, ENCSR299VMZ, ENCSR314HAC, Direct, 4DNFI6XD6JAQ, 4DNFISPUVQHA, ENCSR386KHY, 4DNFI1UEG1HD, 4DNFI8Y9SRP2, GSE108869, ENCSR244BBG, GSE44267, ENCSR991JXX, 4DNFIPAF4PYT, 4DNFIQVMVRP6, ENCSR404HWQ, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFIVJ3IIQL, ENCSR527RXH, ENCSR933UZH, ENCSR833CMG, 4DNFIDBIEXI7, 4DNFIDKJFK2S, 4DNFIFLJLIS5, GSE105028, 4DNFIHN2QSMX, 4DNFIH7TH4MF

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000224790