Deatailed information for gene ENSG00000224860
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00025622
- Gene Symbol: GXYLT1P2
- Ensembl ID: ENSG00000224860
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Gene locus: chr21:13824405-13825635
Strand: -
- Gene type: processed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0475
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: IMR-90,Keratinocytes192627,Olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,HeLa-S3,H9-hESC,iPSC,HCT-116,Hep-G2,H1-hESC,Motor-Neuron,CyT49-hESC,RT-112,CyT49-endoderm,KBM-7,CyT49-Gut,HAP1
- Related loop:
chr21:10325000-10350000~~chr21:13800000-13825000,
chr21:10350000-10375000~~chr21:13800000-13825000,
chr21:12975000-13000000~~chr21:13800000-13825000,
chr21:13000000-13025000~~chr21:13800000-13825000,
chr21:13250000-13275000~~chr21:13800000-13825000,
chr21:13275000-13300000~~chr21:13800000-13825000,
chr21:13300000-13325000~~chr21:13800000-13825000,
chr21:13450000-13475000~~chr21:13800000-13825000,
chr21:13450000-13475000~~chr21:13825000-13850000,
chr21:13525000-13550000~~chr21:13800000-13825000,
chr21:13550000-13575000~~chr21:13800000-13825000,
chr21:13575000-13600000~~chr21:13800000-13825000,
chr21:13650000-13675000~~chr21:13800000-13825000,
chr21:13800000-13825000~~chr21:13950000-13975000,
chr21:13800000-13825000~~chr21:13975000-14000000,
chr21:13800000-13825000~~chr21:14025000-14050000,
chr21:13800000-13825000~~chr21:14100000-14125000,
chr21:13800000-13825000~~chr21:14125000-14150000,
chr21:13800000-13825000~~chr21:14225000-14250000,
chr21:13800000-13825000~~chr21:14375000-14400000,
chr21:13800000-13825000~~chr21:14675000-14700000,
chr21:5225000-5250000~~chr21:13800000-13825000,
chr21:6900000-6925000~~chr21:13800000-13825000,
chr21:6925000-6950000~~chr21:13800000-13825000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop study:
4DNFIQYQWPF5, 4DNFIMROE6N4, 4DNFITUOMFUQ, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR410MDC, 4DNFIEYQ5ZIR, 4DNFIBCIA62Q, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIYD8LO9Z, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR123UVP, 4DNFICEGAHRC, 4DNFIIMZB6Y9, 4DNFIL9M97T2, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFI3A3VYWU, ENCSR637QCS, Direct, 4DNFIX7H3CE2, 4DNFIV56OFE3, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, 4DNFI8Y9SRP2, 4DNFIYDBBSE3, 4DNFIEJEFCAM, ENCSR244BBG, 4DNFIQRTP7NM, 4DNFI9815EEJ, 4DNFIOCW5AEM, ENCSR305RTT, 4DNFI9ZWZ5BS, 4DNFI5LCW273, 4DNFI2J1ODWB, 4DNFI7XAZNNQ, 4DNFIJ8JKKWJ, 4DNFIP71EWXC, 4DNFIFLJLIS5, 4DNFILIM6FDL, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFINEQY95T, 4DNFIQ2687RT, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIT96Z365
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .