Deatailed information for gene ENSG00000224905
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00025654
- Gene Symbol: AP001347.1
- Ensembl ID: ENSG00000224905
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Gene locus: chr21:14027420-14144468
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.5245
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.566
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: IMR-90,TAMR-MCF7,H1-Mesenchymal,MCF-7,GM12878,K-562,HFFc6,HeLa-S3,KU-19-19,H9-hESC,iPSC,HCT-116,Hep-G2,H1-hESC,Motor-Neuron,CyT49-hESC,RT-112,CyT49-endoderm,HFF-hTERT,HAP1,MCF7-FASR
- Related loop:
chr21:13000000-13025000~~chr21:14100000-14125000,
chr21:13450000-13475000~~chr21:14100000-14125000,
chr21:13450000-13475000~~chr21:14125000-14150000,
chr21:13500000-13525000~~chr21:14050000-14075000,
chr21:13550000-13575000~~chr21:14125000-14150000,
chr21:13800000-13825000~~chr21:14025000-14050000,
chr21:13800000-13825000~~chr21:14100000-14125000,
chr21:13800000-13825000~~chr21:14125000-14150000,
chr21:13805524-13807565~~chr21:14118402-14121049,
chr21:13806384-13807544~~chr21:14119421-14121216,
chr21:13850000-13875000~~chr21:14100000-14125000,
chr21:13875000-13900000~~chr21:14050000-14075000,
chr21:13875000-13900000~~chr21:14100000-14125000,
chr21:13875000-13900000~~chr21:14125000-14150000,
chr21:13975000-14000000~~chr21:14075000-14100000,
chr21:14000000-14025000~~chr21:14150000-14175000,
chr21:14025000-14050000~~chr21:14125000-14150000,
chr21:14025000-14050000~~chr21:14225000-14250000,
chr21:14025000-14050000~~chr21:14375000-14400000,
chr21:14050000-14075000~~chr21:14475000-14500000,
chr21:14075000-14100000~~chr21:15025000-15050000,
chr21:14075000-14100000~~chr21:15725000-15750000,
chr21:14075000-14100000~~chr21:17600000-17625000,
chr21:14075000-14100000~~chr21:17775000-17800000,
chr21:14100000-14125000~~chr21:14375000-14400000,
chr21:14100000-14125000~~chr21:15150000-15175000,
chr21:14125000-14150000~~chr21:14225000-14250000,
chr21:6875000-6900000~~chr21:14050000-14075000,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFIMROE6N4, GSE118716, 4DNFITUOMFUQ, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR410MDC, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIYD8LO9Z, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR123UVP, 4DNFICEGAHRC, 4DNFIIMZB6Y9, GSE52457, Direct, 4DNFIYDBBSE3, 4DNFI8Y9SRP2, 4DNFI1UEG1HD, 4DNFIEJEFCAM, 4DNFIZF1KI43, ENCSR305RTT, ENCSR404HWQ, 4DNFI9ZWZ5BS, ENCSR338WUS, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, 4DNFIFLJLIS5, 4DNFINEQY95T, GSE105028, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .