Deatailed information for gene ENSG00000224924
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00025666
- Gene Symbol: LINC00320
- Ensembl ID: ENSG00000224924
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Gene locus: chr21:20684692-20803054
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = -0.0302
FDR = 0.0001
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.833
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: HEK293T,K-562,H1-hESC,HFF-hTERT,KU-19-19,HeLa-S3,H9-hESC,H1-Mesenchymal,HUES64
- Related loop:
chr21:18000000-18025000~~chr21:20800000-20825000,
chr21:18525000-18550000~~chr21:20775000-20800000,
chr21:18525000-18550000~~chr21:20800000-20825000,
chr21:19375000-19400000~~chr21:20800000-20825000,
chr21:19875000-19900000~~chr21:20750000-20775000,
chr21:20175000-20200000~~chr21:20775000-20800000,
chr21:20300000-20325000~~chr21:20775000-20800000,
chr21:20525000-20550000~~chr21:20675000-20700000,
chr21:20525000-20550000~~chr21:20750000-20775000,
chr21:20525000-20550000~~chr21:20775000-20800000,
chr21:20550000-20575000~~chr21:20775000-20800000,
chr21:20625000-20650000~~chr21:20775000-20800000,
chr21:20650000-20675000~~chr21:20775000-20800000,
chr21:20650000-20675000~~chr21:20800000-20825000,
chr21:20738603-20740749~~chr21:20881609-20884286,
chr21:20738788-20740284~~chr21:20881848-20883515,
chr21:20738816-20740295~~chr21:20881653-20883733,
chr21:20775000-20800000~~chr21:20875000-20900000,
chr21:20775000-20800000~~chr21:20925000-20950000,
chr21:20775000-20800000~~chr21:20950000-20975000,
chr21:20800000-20825000~~chr21:20925000-20950000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIE8T8JZ8, GSE44267, 4DNFI8649RQJ, GSE52457, 4DNFIQVMVRP6, ENCSR404HWQ, 4DNFIBM714BP, 4DNFIWZEN3FF, ENCSR338WUS, 4DNFIVJ3IIQL, GSE43070, Direct, 4DNFIDKJFK2S, 4DNFISPUVQHA, GSE105028, 4DNFIB7QTIMH, 4DNFIDBIEXI7, 4DNFIZF1KI43, GSE97394
- Cohesin-loop subunit: CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .