Deatailed information for gene ENSG00000225218
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00025865
- Gene Symbol: AP001628.1
- Ensembl ID: ENSG00000225218
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Gene locus: chr21:42831039-42836477
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0883
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.855
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: NCI-H1437,HL-60,GM12891,GM12878,K-562,MCF-10A,Kelly,A-549,DU145,H1-hESC,HAP1,HFF-hTERT,HFFc6,MSLCL,GM12892,SU-DHL-2,H9-hESC,SU-DHL-4
- Related loop:
chr21:41425000-41450000~~chr21:42825000-42850000,
chr21:41625000-41650000~~chr21:42825000-42850000,
chr21:42125000-42150000~~chr21:42825000-42850000,
chr21:42150000-42175000~~chr21:42825000-42850000,
chr21:42163825-42165601~~chr21:42832873-42834191,
chr21:42575000-42600000~~chr21:42825000-42850000,
chr21:42592083-42595449~~chr21:42832828-42834282,
chr21:42592115-42595504~~chr21:42832880-42834268,
chr21:42592229-42594657~~chr21:42832535-42834269,
chr21:42592240-42594527~~chr21:42832592-42834225,
chr21:42592259-42595490~~chr21:42830397-42831857,
chr21:42592259-42595490~~chr21:42832814-42834600,
chr21:42592470-42594527~~chr21:42832538-42834234,
chr21:42592472-42595486~~chr21:42832806-42834627,
chr21:42592654-42594700~~chr21:42830471-42831810,
chr21:42592693-42594316~~chr21:42832961-42834215,
chr21:42592699-42594208~~chr21:42832969-42834211,
chr21:42630796-42632440~~chr21:42832828-42834282,
chr21:42651607-42653884~~chr21:42832835-42834223,
chr21:42791592-42793048~~chr21:42832819-42834264,
chr21:42825000-42850000~~chr21:43675000-43700000,
chr21:42825000-42850000~~chr21:44900000-44925000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, ENCSR662QKG, ENCSR499RVD, 4DNFI5SUHCGZ, GSE120294, 4DNFIPV5KFMK, ENCSR672RHL, GSE103148, 4DNFIHKWIZ9T, 4DNFIYD8LO9Z, GSE131580, ENCSR981FNA, 4DNFIV239W4L, ENCSR752QCX, ENCSR452NHL, 4DNFI1E6NJQJ, ENCSR128RPG, GSE52457, ENCSR658RQQ, ENCSR299VMZ, Direct, GSE101921, ENCSR244BBG, ENCSR033GUP, ENCSR393LOP, ENCSR000FDB, 4DNFIFLJLIS5, ENCSR833CMG, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .