Deatailed information for gene ENSG00000225267
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00025895
- Gene Symbol: RPL8P2
- Ensembl ID: ENSG00000225267
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Gene locus: chr21:30263379-30263881
Strand: -
- Gene type: processed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0557
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: NPC-H9,MSiPS,Skin-Fibroblast,K-562,HT-1197,H1-hESC,HFF-hTERT,K1,LNCaP,SU-DHL-2,H9-hESC,HUES64
- Related loop:
chr21:29925000-29950000~~chr21:30250000-30275000,
chr21:29943210-29945043~~chr21:30257090-30259197,
chr21:30025000-30050000~~chr21:30250000-30275000,
chr21:30043713-30045634~~chr21:30257148-30259258,
chr21:30043756-30045614~~chr21:30257090-30259197,
chr21:30043774-30045603~~chr21:30257103-30259279,
chr21:30043897-30045697~~chr21:30256685-30258690,
chr21:30070984-30073381~~chr21:30257090-30259197,
chr21:30071470-30073906~~chr21:30257148-30259258,
chr21:30071597-30073842~~chr21:30257103-30259279,
chr21:30071764-30073904~~chr21:30256697-30259212,
chr21:30075000-30100000~~chr21:30250000-30275000,
chr21:30150000-30175000~~chr21:30250000-30275000,
chr21:30208954-30210477~~chr21:30257090-30259197,
chr21:30208982-30210528~~chr21:30257106-30259191,
chr21:30208984-30210508~~chr21:30257092-30259179,
chr21:30209042-30210435~~chr21:30257097-30258737,
chr21:30250000-30275000~~chr21:30400000-30425000,
chr21:30250000-30275000~~chr21:30500000-30525000,
chr21:30250000-30275000~~chr21:31050000-31075000,
chr21:30257134-30259115~~chr21:31179827-31181941,
chr21:30268150-30269592~~chr21:31085537-31087555,
chr21:30268178-30269643~~chr21:30408195-30409710,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
ENCSR128RPG, ENCSR778FXH, ENCSR732QOH, 4DNFIBM714BP, ENCSR247RGI, ENCSR113OIR, Direct, ENCSR314HAC, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, GSE105028, ENCSR386KHY, 4DNFIDBIEXI7, GSE97394
- Cohesin-loop subunit: CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .