Deatailed information for gene ENSG00000225330
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00025934
- Gene Symbol: AF064860.1
- Ensembl ID: ENSG00000225330
-
Gene locus: chr21:39630270-39726085
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = -0.0253
FDR = 0.0010
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.782
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,TAMR-MCF7,MB157,DU145,Right-Ventricle,Keratinocytes192627,Aorta,GM12892,K1,Small-intestine,hTERT-HME1,Spleen,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,GM19239,HEK293T,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,Pancreas,K-562,Naive-hESC,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,LNCaP,H1-Trophectoderm,SU-DHL-2,H9-hESC,KU-19-19,Primed-hESC,NCI-H1437,iPSC,Liver,ARPE-19,HCT-116,Germinal-Center-B,OCI-AML-3,Hep-G2,REC-1,HT-1197,Kelly,H1-hESC,HCC1599,GM19238,HT-1376,Lung,Motor-Neuron,MSLCL,NaiveB,Bladder,BMEC,HUES64,SU-DHL-4,CyT49-hESC,H1-NPC,HUVEC,HL-60,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,Left-Ventricle,KBM-7,Jurkat,CC-2551,CyT49-Gut,HAP1,HFF-hTERT,MCF7-FASR
- Related loop:
chr21:39100000-39125000~~chr21:39700000-39725000,
chr21:39150000-39175000~~chr21:39700000-39725000,
chr21:39175000-39200000~~chr21:39625000-39650000,
chr21:39175000-39200000~~chr21:39650000-39675000,
chr21:39225000-39250000~~chr21:39700000-39725000,
chr21:39300000-39325000~~chr21:39700000-39725000,
chr21:39375000-39400000~~chr21:39625000-39650000,
chr21:39400000-39425000~~chr21:39700000-39725000,
chr21:39500000-39525000~~chr21:39675000-39700000,
chr21:39500000-39525000~~chr21:39700000-39725000,
chr21:39517168-39519542~~chr21:39705393-39707110,
chr21:39517168-39519542~~chr21:39715040-39717158,
chr21:39517168-39519542~~chr21:39725249-39727184,
chr21:39517259-39519458~~chr21:39714980-39716790,
chr21:39517261-39519776~~chr21:39714731-39716796,
chr21:39517288-39519777~~chr21:39715026-39717283,
chr21:39517297-39519497~~chr21:39714676-39716787,
chr21:39517303-39519751~~chr21:39705185-39706929,
chr21:39517303-39519751~~chr21:39712480-39713816,
chr21:39517303-39519751~~chr21:39715020-39717112,
chr21:39517308-39519721~~chr21:39714941-39716803,
chr21:39517315-39519547~~chr21:39714729-39716798,
chr21:39517322-39519410~~chr21:39715065-39716809,
chr21:39517329-39519377~~chr21:39715066-39716784,
chr21:39517336-39519705~~chr21:39715042-39717340,
chr21:39517343-39519431~~chr21:39715064-39716775,
chr21:39517353-39519456~~chr21:39715029-39716810,
chr21:39517354-39519438~~chr21:39629845-39631913,
chr21:39517354-39519438~~chr21:39705387-39706980,
chr21:39517354-39519438~~chr21:39712470-39713909,
chr21:39517354-39519438~~chr21:39715117-39716791,
chr21:39517358-39519642~~chr21:39705371-39706965,
chr21:39517358-39519642~~chr21:39714870-39717016,
chr21:39517360-39519534~~chr21:39705354-39706952,
chr21:39517360-39519534~~chr21:39712511-39713822,
chr21:39517360-39519534~~chr21:39715036-39716800,
chr21:39517368-39519427~~chr21:39715102-39716748,
chr21:39517369-39519405~~chr21:39715081-39716789,
chr21:39517370-39519432~~chr21:39715121-39716751,
chr21:39517370-39519511~~chr21:39715052-39716779,
chr21:39517372-39519496~~chr21:39715100-39716804,
chr21:39517377-39519678~~chr21:39715115-39716829,
chr21:39517379-39519777~~chr21:39714973-39716797,
chr21:39517380-39519751~~chr21:39714950-39717021,
chr21:39517407-39519894~~chr21:39705344-39706807,
chr21:39517407-39519894~~chr21:39715098-39716781,
chr21:39517409-39519453~~chr21:39715079-39716803,
chr21:39517410-39519337~~chr21:39715310-39716764,
chr21:39517417-39519653~~chr21:39715029-39716795,
chr21:39517439-39519408~~chr21:39715248-39716850,
chr21:39517449-39519764~~chr21:39714705-39716820,
chr21:39517449-39519764~~chr21:39725321-39727028,
chr21:39517500-39519305~~chr21:39715098-39716750,
chr21:39517500-39519881~~chr21:39715027-39716807,
chr21:39517539-39519419~~chr21:39714972-39716820,
chr21:39517541-39519337~~chr21:39715220-39716785,
chr21:39517544-39519746~~chr21:39705156-39706958,
chr21:39517544-39519746~~chr21:39715029-39716799,
chr21:39517545-39519545~~chr21:39715058-39716803,
chr21:39517560-39519419~~chr21:39715031-39716746,
chr21:39517570-39519399~~chr21:39715260-39716808,
chr21:39517583-39519436~~chr21:39715151-39716788,
chr21:39517618-39519383~~chr21:39715097-39716777,
chr21:39517656-39519379~~chr21:39715099-39716759,
chr21:39517703-39519567~~chr21:39715099-39716856,
chr21:39517712-39519561~~chr21:39715048-39716830,
chr21:39517734-39519372~~chr21:39715080-39716802,
chr21:39517800-39519427~~chr21:39715053-39716761,
chr21:39517814-39519374~~chr21:39715017-39716720,
chr21:39517826-39519509~~chr21:39714989-39716693,
chr21:39517837-39519461~~chr21:39715046-39716689,
chr21:39517839-39519351~~chr21:39714993-39716666,
chr21:39517856-39519435~~chr21:39714989-39716725,
chr21:39517859-39519254~~chr21:39715322-39716629,
chr21:39517864-39519219~~chr21:39715357-39716651,
chr21:39525000-39550000~~chr21:39625000-39650000,
chr21:39525000-39550000~~chr21:39700000-39725000,
chr21:39550000-39575000~~chr21:39700000-39725000,
chr21:39600000-39625000~~chr21:39700000-39725000,
chr21:39625000-39650000~~chr21:41650000-41675000,
chr21:39625000-39650000~~chr21:42975000-43000000,
chr21:39633375-39634630~~chr21:39715081-39716789,
chr21:39650000-39675000~~chr21:39750000-39775000,
chr21:39650000-39675000~~chr21:40925000-40950000,
chr21:39700000-39725000~~chr21:41425000-41450000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, 4DNFIHMCILEN, GSE43070, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, ENCSR794RDS, 4DNFIBN9K4V9, ENCSR852KQC, ENCSR361AYD, 4DNFIDSWKFF5, GSE103148, 4DNFI7H4II2V, 4DNFIZ4F74QR, ENCSR350NJV, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, ENCSR113OIR, 4DNFI9VXTBE2, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, GSE99541, ENCSR668RDP, 4DNFIL5K3MA1, 4DNFIS3DIH4V, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFIJ5DQZVK, ENCSR658RQQ, ENCSR299VMZ, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFI8Y9SRP2, 4DNFIK61ILGM, GSE108869, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, 4DNFI7XAZNNQ, ENCSR527RXH, GSE105028, ENCSR833CMG, 4DNFIBKZK63V, ENCSR033GUP, 4DNFIQWD8ZYD, GSE87112, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, 4DNFIB7QTIMH, GSE126792, ENCSR146FPM, 4DNFIOX3BGNE, GSE69643, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR587DSF, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, GSE52457, 4DNFIBT4EAKN, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIXWCLD4M, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR991JXX, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIH7TH4MF, 4DNFIT96Z365, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIR8OU6QJ, 4DNFI6CWNUFL, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, GSE84022, 4DNFIPV5KFMK, ENCSR672RHL, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, 4DNFIFHU75I5, 4DNFIYD8LO9Z, ENCSR444BAR, ENCSR123UVP, 4DNFIL9M97T2, ENCSR550JLK, 4DNFIJ7OAIFQ, 4DNFIM2BMJ33, 4DNFIALNLR78, 4DNFIYDBBSE3, ENCSR386KHY, 4DNFIEJEFCAM, 4DNFIQRTP7NM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, ENCSR255XYX, ENCSR404HWQ, 4DNFIE5TEYK7, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, ENCSR094EIC, GSE58752, ENCSR507AHE, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, 4DNFIILDWK8M, 4DNFI6EIFUZI, 4DNFIBCIA62Q, 4DNFII6AN691, GSE111537, GSE131580, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, 4DNFIOUSETUP, ENCSR752QCX, ENCSR128RPG, 4DNFISTWNV9C, 4DNFI6JJQKFJ, ENCSR228TUX, 4DNFI8JFOAJT, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI5LCW273, 4DNFIP71EWXC, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .