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Basic information

CohesinDB ID: CDBG00025935

Gene Symbol: LINC01678

Ensembl ID: ENSG00000225331

Gene locus: chr21:44158739-44160072 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1918 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.333
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: SARS-Cov2-olfactory,HCT-116,GM12878,K-562,HFF-hTERT,HFFc6,Keratinocytes192627,CyT49-hESC

Related loop: chr21:44150000-44175000~~chr21:44250000-44275000, chr21:44150000-44175000~~chr21:44275000-44300000, chr21:44150000-44175000~~chr21:44475000-44500000, chr21:5075000-5100000~~chr21:44150000-44175000, chr21:5100000-5125000~~chr21:44150000-44175000,

Cohesin-loop type: HiC,Direct

Cohesin-loop study: 4DNFIHKWIZ9T, 4DNFIC3HAU11, 4DNFIF2D3TL9, 4DNFIBCIA62Q, 4DNFI7XAZNNQ, Direct, 4DNFIKYXMF1E, 4DNFITUOMFUQ, 4DNFIP71EWXC, 4DNFIFLJLIS5, 4DNFILIM6FDL, 4DNFI5SUHCGZ, 4DNFII84FBKM, 4DNFIZ4F74QR, 4DNFIL9M97T2

Cohesin-loop subunit: Other

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000225331