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Basic information

CohesinDB ID: CDBG00026007

Gene Symbol: LINC01671

Ensembl ID: ENSG00000225431

Gene locus: chr21:42599279-42615058 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = -0.0742 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.917
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,DU145,Keratinocytes192627,K1,hTERT-HME1,Spleen,H1-Mesenchymal,H1-Mesendoderm,Olfactory,Hepatocyte-H9,GM19239,HEK293T,MCF-7,GM12891,SARS-Cov2-olfactory,GM12878,K-562,A-549,PAEC,HeLa-S3,H1-Trophectoderm,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,Liver,REC-1,ARPE-19,HCT-116,Germinal-Center-B,Hep-G2,HT-1197,H1-hESC,HCC1599,Motor-Neuron,MSLCL,NaiveB,BMEC,HUES64,SU-DHL-4,HUVEC,HL-60,NPC-H9,RT-112,Skin-Fibroblast,Jurkat,CyT49-Gut,CC-2551,HAP1,HFF-hTERT,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: GSE95015, GSE43070, 4DNFIDJ2JZ7Q, 4DNFIBN9K4V9, ENCSR852KQC, ENCSR361AYD, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIA6NSSBJ, 4DNFIRKGMZRQ, ENCSR668RDP, GSE97394, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, ENCSR658RQQ, ENCSR299VMZ, 4DNFI6XD6JAQ, GSE116872, ENCSR305RTT, ENCSR000FDB, 4DNFI7XAZNNQ, GSE105028, ENCSR833CMG, 4DNFIQWD8ZYD, GSE87112, 4DNFI3CFMRID, ENCSR662QKG, GSE94872, GSE118716, ENCSR499RVD, 4DNFIB7QTIMH, ENCSR146FPM, 4DNFIBXWIH8J, GSE155380, ENCSR587DSF, ENCSR452NHL, GSE80820, GSE52457, 4DNFIXWCLD4M, ENCSR314HAC, ENCSR479MTN, Direct, 4DNFIAS8LV1C, 4DNFIX7H3CE2, ENCSR244BBG, ENCSR991JXX, 4DNFIVJ3IIQL, 4DNFIQ2687RT, 4DNFIDBIEXI7, 4DNFIWZEN3FF, 4DNFIE8E4ANZ, GSE120294, GSE84022, ENCSR672RHL, 4DNFIW8TIFI5, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIF2D3TL9, ENCSR123UVP, 4DNFIL9M97T2, 4DNFI3A3VYWU, 4DNFIJ7OAIFQ, 4DNFIM2BMJ33, 4DNFIBY3UHJB, ENCSR386KHY, 4DNFIQRTP7NM, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, ENCSR255XYX, ENCSR404HWQ, 4DNFIE5TEYK7, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, GSE58752, ENCSR507AHE, 4DNFI8649RQJ, GSE116875, GSE108787, GSE131580, ENCSR381DCY, ENCSR981FNA, 4DNFIV239W4L, 4DNFIOUSETUP, ENCSR752QCX, ENCSR128RPG, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFIP71EWXC, 4DNFIHN2QSMX

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000225431