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Basic information

CohesinDB ID: CDBG00026056

Gene Symbol: GAPDHP16

Ensembl ID: ENSG00000225502

Gene locus: chr21:14774300-14775262 Strand: +

Gene type: processed_pseudogene

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1667 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.900
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: H9-endodermal,DU145,GM12892,H1-Mesendoderm,Olfactory,MCF-7,HEK293T,GM12878,K-562,HeLa-S3,SU-DHL-2,H9-hESC,iPSC,HT-1197,Kelly,H1-hESC,MSLCL,NaiveB,SU-DHL-4,HUVEC,NPC-H9,HFF-hTERT

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIH2A7IKF, 4DNFI8649RQJ, 4DNFIQYQWPF5, 4DNFI3CFMRID, 4DNFIWZEN3FF, GSE94872, 4DNFIDJ2JZ7Q, GSE118716, 4DNFIE8E4ANZ, 4DNFIB7QTIMH, GSE120294, GSE84022, ENCSR672RHL, GSE103148, 4DNFI7H4II2V, ENCSR478BMT, 4DNFIBM714BP, 4DNFIREVU1Z5, 4DNFIWNNO89O, GSE99541, ENCSR981FNA, ENCSR587DSF, ENCSR452NHL, 4DNFICEGAHRC, 4DNFIE8T8JZ8, 4DNFIIMZB6Y9, ENCSR128RPG, GSE52457, ENCSR658RQQ, 4DNFIM2BMJ33, Direct, 4DNFI6XD6JAQ, 4DNFIXWCLD4M, 4DNFIX7H3CE2, ENCSR386KHY, GSE44267, 4DNFIPAF4PYT, 4DNFIQVMVRP6, GSE48592, ENCSR000FDB, ENCSR247RGI, ENCSR338WUS, 4DNFI2J1ODWB, 4DNFI5LCW273, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, GSE105028, 4DNFIDBIEXI7, ENCSR033GUP

Cohesin-loop subunit: SMC1,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000225502