Deatailed information for gene ENSG00000225906
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00026322
- Gene Symbol: AP000949.1
- Ensembl ID: ENSG00000225906
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Gene locus: chr21:22882581-22884000
Strand: +
- Gene type: processed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.1239
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: K-562,H1-hESC,HFF-hTERT,HeLa-S3,H1-Trophectoderm,H9-hESC,H1-Mesenchymal,H1-Mesendoderm
- Related loop:
chr21:21225000-21250000~~chr21:22875000-22900000,
chr21:21500000-21525000~~chr21:22875000-22900000,
chr21:22175000-22200000~~chr21:22875000-22900000,
chr21:22550000-22575000~~chr21:22875000-22900000,
chr21:22625000-22650000~~chr21:22875000-22900000,
chr21:22725000-22750000~~chr21:22875000-22900000,
chr21:22875000-22900000~~chr21:22975000-23000000,
chr21:22875000-22900000~~chr21:23000000-23025000,
chr21:22875000-22900000~~chr21:23100000-23125000,
chr21:22875000-22900000~~chr21:23150000-23175000,
chr21:22875000-22900000~~chr21:23375000-23400000,
chr21:22875000-22900000~~chr21:23875000-23900000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop study:
4DNFI8649RQJ, GSE52457, 4DNFIQVMVRP6, 4DNFIBM714BP, 4DNFIWZEN3FF, 4DNFIM2BMJ33, 4DNFIVJ3IIQL, 4DNFI6XD6JAQ, Direct, 4DNFIXWCLD4M, 4DNFIE8E4ANZ, GSE105028, 4DNFICEGAHRC, 4DNFIDBIEXI7, 4DNFIW8TIFI5, 4DNFI7H4II2V
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .