Deatailed information for gene ENSG00000226012
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00026397
- Gene Symbol: AP001434.1
- Ensembl ID: ENSG00000226012
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Gene locus: chr21:38237216-38238201
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0216
FDR = 0.0052
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.892
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,Aorta,Olfactory,MCF-7,GM12878,A-549,HFFc6,HeLa-S3,H1-Trophectoderm,H9-hESC,Liver,H1-hESC,HT-1376,U-937,HUVEC,RT-112,HFF-hTERT
- Related loop:
chr21:17775000-17800000~~chr21:38225000-38250000,
chr21:25200000-25225000~~chr21:38225000-38250000,
chr21:25450000-25475000~~chr21:38225000-38250000,
chr21:36500000-36525000~~chr21:38225000-38250000,
chr21:37250000-37275000~~chr21:38225000-38250000,
chr21:37325000-37350000~~chr21:38225000-38250000,
chr21:38225000-38250000~~chr21:38325000-38350000,
chr21:38225000-38250000~~chr21:38350000-38375000,
chr21:38225000-38250000~~chr21:42225000-42250000,
chr21:38233977-38237313~~chr21:38351817-38353514,
chr21:38234388-38237054~~chr21:38351763-38353495,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI3CFMRID, ENCSR662QKG, 4DNFIATA1HD5, 4DNFIWZEN3FF, 4DNFI5CGQ46V, 4DNFIMROE6N4, GSE118716, GSE94872, 4DNFIE8E4ANZ, GSE108787, 4DNFI5SUHCGZ, ENCSR852KQC, GSE120294, 4DNFIPV5KFMK, 4DNFIZ4F74QR, 4DNFI7H4II2V, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIBM714BP, 4DNFI9VXTBE2, 4DNFIRKGMZRQ, GSE99541, GSE155380, 4DNFIOUSETUP, GSE80820, GSE52457, 4DNFIM2BMJ33, Direct, GSE165038, 4DNFISPUVQHA, 4DNFIAS8LV1C, 4DNFI1UEG1HD, GSE101921, GSE108869, 4DNFIYIAUEPW, 4DNFIAWVDQ8C, 4DNFIC3HAU11, 4DNFIQVMVRP6, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, ENCSR933UZH, 4DNFIFLJLIS5, GSE105028, GSE58752, 4DNFIH7TH4MF, 4DNFII84FBKM
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .