Deatailed information for gene ENSG00000226043
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00026421
- Gene Symbol: AP000561.1
- Ensembl ID: ENSG00000226043
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Gene locus: chr21:22209938-22420819
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.1391
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.970
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: SARS-Cov2-olfactory,CyT49-endoderm,IMR-90,H1-hESC,A-549,HFF-hTERT,HFFc6,Right-Ventricle,HeLa-S3,H9-hESC,H1-Mesendoderm
- Related loop:
chr21:20500000-20525000~~chr21:22275000-22300000,
chr21:21925000-21950000~~chr21:22350000-22375000,
chr21:21975000-22000000~~chr21:22350000-22375000,
chr21:22000000-22025000~~chr21:22300000-22325000,
chr21:22175000-22200000~~chr21:22275000-22300000,
chr21:22175000-22200000~~chr21:22300000-22325000,
chr21:22175000-22200000~~chr21:22350000-22375000,
chr21:22175000-22200000~~chr21:22425000-22450000,
chr21:22225000-22250000~~chr21:27900000-27925000,
chr21:22250000-22275000~~chr21:27900000-27925000,
chr21:22325000-22350000~~chr21:22975000-23000000,
chr21:22350000-22375000~~chr21:22725000-22750000,
chr21:22350000-22375000~~chr21:23150000-23175000,
chr21:22350000-22375000~~chr21:25375000-25400000,
chr21:22375000-22400000~~chr21:22775000-22800000,
chr21:22425000-22450000~~chr21:22525000-22550000,
chr21:22425000-22450000~~chr21:22625000-22650000,
chr21:22425000-22450000~~chr21:22775000-22800000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
4DNFIE8T8JZ8, 4DNFI8649RQJ, GSE52457, GSE87112, 4DNFIVJ3IIQL, Direct, 4DNFIDJ2JZ7Q, 4DNFIMROE6N4, 4DNFISPUVQHA, GSE105028, 4DNFIYDBBSE3, 4DNFIS5F6EBL, ENCSR499RVD, 4DNFI5SUHCGZ, ENCSR852KQC, GSE120294, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFICEGAHRC, 4DNFIIMZB6Y9
- Cohesin-loop subunit: SMC1,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .