Deatailed information for gene ENSG00000226115
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00026473
- Gene Symbol: AP001476.2
- Ensembl ID: ENSG00000226115
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Gene locus: chr21:46056515-46057567
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.1680
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.950
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: HEK293T,Liver,K-562,H1-hESC,HFF-hTERT,HFFc6,MCF7-FASR,HeLa-S3,H9-hESC,H1-Mesendoderm
- Related loop:
chr21:44850000-44875000~~chr21:46050000-46075000,
chr21:45300000-45325000~~chr21:46050000-46075000,
chr21:45325000-45350000~~chr21:46050000-46075000,
chr21:45350000-45375000~~chr21:46050000-46075000,
chr21:45625000-45650000~~chr21:46050000-46075000,
chr21:45675000-45700000~~chr21:46050000-46075000,
chr21:45725000-45750000~~chr21:46050000-46075000,
chr21:45875000-45900000~~chr21:46050000-46075000,
chr21:45950000-45975000~~chr21:46050000-46075000,
- Cohesin-loop type: HiC,Direct
- Cohesin-loop study:
GSE44267, GSE52457, 4DNFIWZEN3FF, 4DNFIM2BMJ33, Direct, 4DNFIFI6NIKJ, GSE118716, GSE105028, 4DNFIDBIEXI7, 4DNFI5SUHCGZ, GSE58752, 4DNFII84FBKM, 4DNFIW8TIFI5
- Cohesin-loop subunit: Other
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .