Deatailed information for gene ENSG00000226204
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00026530
- Gene Symbol: AL157359.1
- Ensembl ID: ENSG00000226204
-
Gene locus: chr21:18953263-18967058
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.0083
FDR = 0.2939
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: HEK293T,NPC-H9,H1-hESC,HFF-hTERT,HeLa-S3,SU-DHL-2,H9-hESC,H1-Mesendoderm,SU-DHL-4
- Related loop:
chr21:18498149-18500956~~chr21:18950806-18953065,
chr21:18499328-18500749~~chr21:18950898-18953042,
chr21:18500000-18525000~~chr21:18925000-18950000,
chr21:18500000-18525000~~chr21:18950000-18975000,
chr21:18525000-18550000~~chr21:18925000-18950000,
chr21:18800000-18825000~~chr21:18950000-18975000,
chr21:18925000-18950000~~chr21:19375000-19400000,
chr21:18950000-18975000~~chr21:19175000-19200000,
chr21:18950000-18975000~~chr21:19250000-19275000,
chr21:18950000-18975000~~chr21:19275000-19300000,
chr21:18950000-18975000~~chr21:19475000-19500000,
chr21:18950000-18975000~~chr21:19500000-19525000,
chr21:18950000-18975000~~chr21:19825000-19850000,
chr21:18950000-18975000~~chr21:20000000-20025000,
chr21:18950000-18975000~~chr21:20025000-20050000,
chr21:18950000-18975000~~chr21:20425000-20450000,
chr21:18950000-18975000~~chr21:20550000-20575000,
chr21:18950000-18975000~~chr21:20875000-20900000,
chr21:18950724-18953125~~chr21:19506984-19508943,
chr21:18950733-18953097~~chr21:19507036-19509059,
chr21:18950914-18953029~~chr21:19321763-19323259,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIE8T8JZ8, GSE44267, ENCSR128RPG, GSE52457, ENCSR658RQQ, ENCSR247RGI, 4DNFIVJ3IIQL, Direct, 4DNFISPUVQHA, GSE105028, 4DNFIDZT7PR8, 4DNFIEJEFCAM, 4DNFI7H4II2V
- Cohesin-loop subunit: CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .