Deatailed information for gene ENSG00000226406
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00026672
- Gene Symbol: RBMX2P1
- Ensembl ID: ENSG00000226406
-
Gene locus: chr21:14829153-14829989
Strand: -
- Gene type: processed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.1479
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.886
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: MCF-7,GM12878,IMR-90,A-549,HFF-hTERT
- Related loop:
chr21:14375000-14400000~~chr21:14825000-14850000,
chr21:14400000-14425000~~chr21:14825000-14850000,
chr21:14475000-14500000~~chr21:14825000-14850000,
chr21:14500000-14525000~~chr21:14825000-14850000,
chr21:14825000-14850000~~chr21:15475000-15500000,
chr21:14825000-14850000~~chr21:15500000-15525000,
chr21:14825000-14850000~~chr21:15575000-15600000,
chr21:14825021-14827663~~chr21:15552007-15554258,
- Cohesin-loop type: HiC,Direct,ChIAPET
- Cohesin-loop study:
ENCSR393LOP, ENCSR244BBG, Direct, GSE118716, 4DNFISPUVQHA, ENCSR852KQC, 4DNFIH7TH4MF, ENCSR981FNA
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .