Deatailed information for gene ENSG00000226433
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00026694
- Gene Symbol: AP000290.1
- Ensembl ID: ENSG00000226433
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Gene locus: chr21:33152613-33159110
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.1198
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: MCF-10A,H1-Mesendoderm,MCF-7,HEK293T,GM12878,K-562,A-549,HFFc6,HeLa-S3,H9-hESC,iPSC,REC-1,Hep-G2,H1-hESC,HCC1599,Motor-Neuron,U-937,HUES64,HUVEC,RT-112,KBM-7,HFF-hTERT,HAP1
- Related loop:
chr21:32625000-32650000~~chr21:33125000-33150000,
chr21:32650000-32675000~~chr21:33125000-33150000,
chr21:32675000-32700000~~chr21:33150000-33175000,
chr21:32825000-32850000~~chr21:33125000-33150000,
chr21:32825000-32850000~~chr21:33150000-33175000,
chr21:32850000-32875000~~chr21:33125000-33150000,
chr21:32925000-32950000~~chr21:33125000-33150000,
chr21:32950000-32975000~~chr21:33125000-33150000,
chr21:32975000-33000000~~chr21:33125000-33150000,
chr21:32975000-33000000~~chr21:33150000-33175000,
chr21:33000000-33025000~~chr21:33125000-33150000,
chr21:33025000-33050000~~chr21:33125000-33150000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFI3CFMRID, ENCSR662QKG, GSE95015, ENCSR194SRI, GSE116875, 4DNFIR8OU6QJ, 4DNFI5CGQ46V, 4DNFIDJ2JZ7Q, 4DNFIMROE6N4, GSE118716, GSE94872, ENCSR499RVD, GSE108787, 4DNFI5SUHCGZ, GSE120294, 4DNFIILDWK8M, 4DNFI7H4II2V, 4DNFIW8TIFI5, 4DNFIZ4F74QR, 4DNFIP25GZGA, 4DNFIBM714BP, 4DNFIREVU1Z5, ENCSR866FWQ, GSE155380, 4DNFICSTCJQZ, 4DNFIV239W4L, GSE97394, GSE80820, 4DNFIA7GB1NB, 4DNFI1E6NJQJ, 4DNFIJ3DZPGM, 4DNFI9YAVTI1, 4DNFIJ5DQZVK, ENCSR550JLK, GSE52457, Direct, GSE165038, 4DNFIALNLR78, GSE101921, 4DNFIK61ILGM, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR228TUX, GSE116872, ENCSR393LOP, GSE44267, ENCSR305RTT, 4DNFI5LCW273, 4DNFI2J1ODWB, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIFLJLIS5, ENCSR094EIC, 4DNFIDZT7PR8, 4DNFIZGCA8AH, GSE105028, 4DNFII84FBKM, 4DNFIT96Z365, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .