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Basic information

CohesinDB ID: CDBG00026741

Gene Symbol: LINC00323

Ensembl ID: ENSG00000226496

Gene locus: chr21:41141540-41148040 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.2701 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.824
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,RT-112,Left-Ventricle,TAMR-MCF7,A-549,CC-2551,HCC1599,HAP1,CyT49-pancreatic,HFF-hTERT,HFFc6,HeLa-S3,MCF7-FASR,H9-hESC

Cohesin-loop type: HiChIP,HiC,Direct

Cohesin-loop study: ENCSR393LOP, 4DNFI9815EEJ, 4DNFIMEG1QIC, 4DNFI3A3VYWU, 4DNFIA6NSSBJ, 4DNFII6AN691, Direct, 4DNFIMROE6N4, GSE118716, GSE105028, 4DNFI5SUHCGZ, GSE155380, GSE58752, GSE116872, ENCSR244BBG, GSE120294, 4DNFII84FBKM, 4DNFI7H4II2V

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence: Kasumi-1

Cohesin-DEGs, number of studies: 1

Cohesin-DEGs, study: GSE47641

Cohesin-DEGs, subunit: Rad21

eachgene

Deatailed information for gene ENSG00000226496