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Basic information

CohesinDB ID: CDBG00026746

Gene Symbol: USF1P1

Ensembl ID: ENSG00000226501

Gene locus: chr21:33334570-33335096 Strand: +

Gene type: processed_pseudogene

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0559 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.942
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: HEK293T,Liver,SARS-Cov2-olfactory,GM12878,RT-112,K-562,MCF-10A,A-549,HeLa-S3,Olfactory

Related loop: chr21:32925000-32950000~~chr21:33325000-33350000, chr21:33025000-33050000~~chr21:33325000-33350000, chr21:33200000-33225000~~chr21:33325000-33350000, chr21:33325000-33350000~~chr21:33425000-33450000, chr21:33325000-33350000~~chr21:33450000-33475000,

Cohesin-loop type: HiChIP,HiC,Direct

Cohesin-loop study: 4DNFIQWD8ZYD, GSE44267, 4DNFI9YAVTI1, 4DNFIF2D3TL9, 4DNFIM2BMJ33, Direct, 4DNFIX7H3CE2, ENCSR499RVD, 4DNFI8Y9SRP2, 4DNFIZGCA8AH, GSE101921, 4DNFIHN2QSMX, GSE155380, GSE58752, GSE80820

Cohesin-loop subunit: Other,SMC1

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000226501