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Basic information

CohesinDB ID: CDBG00026763

Gene Symbol: AP000289.1

Ensembl ID: ENSG00000226527

Gene locus: chr21:33111503-33123725 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0286 FDR = 0.0002
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.977
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-10A,TAMR-MCF7,DU145,GM12892,K1,hTERT-HME1,Hepatocyte-H9,GM19239,MCF-7,GM12878,K-562,A-549,HFFc6,PAEC,HeLa-S3,SU-DHL-2,H9-hESC,KU-19-19,NCI-H1437,iPSC,REC-1,ARPE-19,Hep-G2,H1-hESC,HCC1599,GM19238,Motor-Neuron,MSLCL,U-937,HUES64,SU-DHL-4,HUVEC,NPC-H9,RT-112,Skin-Fibroblast,KBM-7,Jurkat,HFF-hTERT,HAP1

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI8649RQJ, 4DNFI3CFMRID, ENCSR662QKG, GSE95015, ENCSR194SRI, GSE116875, 4DNFIR8OU6QJ, 4DNFI5CGQ46V, 4DNFIDJ2JZ7Q, 4DNFIMROE6N4, GSE118716, GSE94872, ENCSR499RVD, GSE108787, 4DNFI5SUHCGZ, GSE120294, ENCSR361AYD, ENCSR672RHL, 4DNFIILDWK8M, 4DNFI7H4II2V, 4DNFIW8TIFI5, 4DNFIZ4F74QR, 4DNFIP25GZGA, ENCSR732QOH, 4DNFIBM714BP, 4DNFIREVU1Z5, ENCSR866FWQ, ENCSR668RDP, ENCSR381DCY, GSE155380, 4DNFICSTCJQZ, ENCSR981FNA, ENCSR444BAR, 4DNFIV239W4L, GSE97394, ENCSR587DSF, ENCSR452NHL, 4DNFIA7GB1NB, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, ENCSR128RPG, 4DNFI9YAVTI1, 4DNFIJ5DQZVK, ENCSR550JLK, GSE80820, ENCSR658RQQ, Direct, ENCSR314HAC, ENCSR479MTN, 4DNFIALNLR78, 4DNFISPUVQHA, GSE165038, GSE101921, 4DNFII84FBKM, 4DNFIK61ILGM, 4DNFIYIAUEPW, ENCSR228TUX, ENCSR244BBG, GSE116872, ENCSR393LOP, ENCSR991JXX, 4DNFIC3HAU11, ENCSR305RTT, ENCSR255XYX, ENCSR404HWQ, ENCSR247RGI, ENCSR110JOO, ENCSR338WUS, 4DNFI2J1ODWB, 4DNFI5LCW273, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, ENCSR527RXH, 4DNFIFLJLIS5, ENCSR833CMG, 4DNFIDZT7PR8, 4DNFIVJ3IIQL, 4DNFIZGCA8AH, ENCSR094EIC, GSE105028, ENCSR033GUP, 4DNFIT96Z365, 4DNFIVSCH2CH

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000226527