Deatailed information for gene ENSG00000226543

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  • Basic information
  • CohesinDB ID: CDBG00026776
  • Gene Symbol: MYL6P1
  • Ensembl ID: ENSG00000226543
  • Gene locus: chr21:43855889-43856342 Strand: -
  • Gene type: processed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.1420 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.841
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: HEK293T,Liver,IMR-90,K-562,H1-hESC,HAP1,HeLa-S3,SU-DHL-2,H1-Mesenchymal
  • Related loop: chr21:43175000-43200000~~chr21:43850000-43875000, chr21:43300000-43325000~~chr21:43850000-43875000, chr21:43750000-43775000~~chr21:43850000-43875000, chr21:43816236-43819381~~chr21:43853544-43855897, chr21:43850000-43875000~~chr21:43975000-44000000, chr21:43850000-43875000~~chr21:44000000-44025000, chr21:43850000-43875000~~chr21:44075000-44100000, chr21:43850000-43875000~~chr21:44250000-44275000,
  • Cohesin-loop type: HiC,Direct,ChIAPET
  • Cohesin-loop study: GSE44267, ENCSR128RPG, GSE52457, 4DNFIPAF4PYT, GSE95015, 4DNFIWZEN3FF, GSE43070, Direct, 4DNFIDKJFK2S, 4DNFIDBIEXI7, GSE58752
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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