Deatailed information for gene ENSG00000226580

Check detailed explainations here

  • Basic information
  • CohesinDB ID: CDBG00026802
  • Gene Symbol: RPL39P40
  • Ensembl ID: ENSG00000226580
  • Gene locus: chr21:17500678-17500824 Strand: -
  • Gene type: processed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction,
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = -0.1209 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.656
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: H9-hESC,HFFc6,A-549,HEK293T
  • Related loop: chr21:17375000-17400000~~chr21:17500000-17525000, chr21:17400000-17425000~~chr21:17500000-17525000, chr21:17500000-17525000~~chr21:27500000-27525000,
  • Cohesin-loop type: HiChIP,HiC,Direct
  • Cohesin-loop study: GSE44267, ENCSR662QKG, Direct, GSE105028, 4DNFI5SUHCGZ
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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