Deatailed information for gene ENSG00000226771
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00026927
- Gene Symbol: AP001136.1
- Ensembl ID: ENSG00000226771
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Gene locus: chr21:21223294-21226829
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0952
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: IMR-90,MB157,H1-Mesendoderm,Olfactory,Hepatocyte-H9,MCF-7,GM12891,CyT49-pancreatic,HFFc6,HeLa-S3,SU-DHL-2,KU-19-19,H9-hESC,iPSC,REC-1,HT-1197,H1-hESC,HUES64,SU-DHL-4,NPC-H9,CyT49-endoderm,RT-112,Skin-Fibroblast,HAP1
- Related loop:
chr21:18275000-18300000~~chr21:21200000-21225000,
chr21:21000000-21025000~~chr21:21200000-21225000,
chr21:21200000-21225000~~chr21:21900000-21925000,
chr21:21225000-21250000~~chr21:21350000-21375000,
chr21:21225000-21250000~~chr21:21450000-21475000,
chr21:21225000-21250000~~chr21:21475000-21500000,
chr21:21225000-21250000~~chr21:21500000-21525000,
chr21:21225000-21250000~~chr21:21600000-21625000,
chr21:21225000-21250000~~chr21:21675000-21700000,
chr21:21225000-21250000~~chr21:21900000-21925000,
chr21:21225000-21250000~~chr21:22100000-22125000,
chr21:21225000-21250000~~chr21:22525000-22550000,
chr21:21225000-21250000~~chr21:22775000-22800000,
chr21:21225000-21250000~~chr21:22875000-22900000,
chr21:21225000-21250000~~chr21:23375000-23400000,
chr21:21231430-21233404~~chr21:21920936-21923160,
chr21:21231477-21233381~~chr21:21687907-21690091,
chr21:21231521-21233402~~chr21:21687901-21690144,
chr21:21231528-21233140~~chr21:21688144-21689874,
chr21:21231535-21233401~~chr21:21687936-21689865,
chr21:21231535-21233401~~chr21:21920963-21923078,
chr21:21231535-21233410~~chr21:21920932-21923125,
chr21:21231541-21233362~~chr21:21920929-21923014,
chr21:21231560-21233379~~chr21:21687926-21689834,
chr21:21231560-21233379~~chr21:21920967-21923026,
chr21:21231567-21233381~~chr21:21921006-21922867,
chr21:21231594-21233378~~chr21:21688096-21689849,
chr21:21231694-21233389~~chr21:21687914-21690120,
chr21:21231694-21233389~~chr21:21920950-21923088,
chr21:21231825-21233156~~chr21:21921005-21922555,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
GSE95015, GSE116875, 4DNFIDJ2JZ7Q, 4DNFIMROE6N4, 4DNFIE8E4ANZ, GSE108787, GSE116869, 4DNFI5SUHCGZ, ENCSR852KQC, GSE120294, 4DNFI7H4II2V, ENCSR732QOH, 4DNFI6EIFUZI, 4DNFII6AN691, GSE99541, ENCSR381DCY, GSE155380, 4DNFIJWBWE41, GSE97394, 4DNFICEGAHRC, 4DNFIIMZB6Y9, ENCSR128RPG, GSE52457, 4DNFI3A3VYWU, ENCSR658RQQ, ENCSR299VMZ, Direct, 4DNFIYDBBSE3, ENCSR386KHY, 4DNFI9815EEJ, 4DNFIQVMVRP6, ENCSR404HWQ, ENCSR247RGI, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIFLJLIS5, GSE105028, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .