Deatailed information for gene ENSG00000226930

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  • Basic information
  • CohesinDB ID: CDBG00027038
  • Gene Symbol: GTF2IP2
  • Ensembl ID: ENSG00000226930
  • Gene locus: chr21:13443372-13489176 Strand: -
  • Gene type: unprocessed_pseudogene
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.1454 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.981
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: GM12878,CyT49-endoderm,HCT-116,IMR-90,H1-hESC,HFF-hTERT,HAP1,CyT49-pancreatic,HFFc6,H9-hESC
  • Related loop: chr21:13275000-13300000~~chr21:13450000-13475000, chr21:13450000-13475000~~chr21:13550000-13575000, chr21:13450000-13475000~~chr21:13800000-13825000, chr21:13450000-13475000~~chr21:13825000-13850000, chr21:13450000-13475000~~chr21:14100000-14125000, chr21:13450000-13475000~~chr21:14125000-14150000, chr21:13450000-13475000~~chr21:18100000-18125000, chr21:6925000-6950000~~chr21:13450000-13475000,
  • Cohesin-loop type: HiC,Direct
  • Cohesin-loop study: 4DNFI8649RQJ, 4DNFI9815EEJ, ENCSR637QCS, 4DNFII6AN691, Direct, 4DNFIMROE6N4, 4DNFIFLJLIS5, 4DNFINEQY95T, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, 4DNFIYDBBSE3, 4DNFIJWBWE41, 4DNFIH7TH4MF, ENCSR123UVP, 4DNFIIMZB6Y9, ENCSR410MDC
  • Cohesin-loop subunit: Other
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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