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Basic information

CohesinDB ID: CDBG00027040

Gene Symbol: LINC00161

Ensembl ID: ENSG00000226935

Gene locus: chr21:28539317-28540355 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction,

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.3492 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.603
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,RT-112,IMR-90,H1-hESC,A-549,HFF-hTERT,NaiveB,HFFc6,Keratinocytes192627,HeLa-S3

Cohesin-loop type: HiC,Direct

Cohesin-loop study: 4DNFI8649RQJ, 4DNFI3CFMRID, 4DNFIWZEN3FF, GSE43070, 4DNFIMROE6N4, 4DNFIE8E4ANZ, GSE108787, 4DNFI5SUHCGZ, ENCSR852KQC, GSE84022, 4DNFIZ4F74QR, 4DNFIW8TIFI5, 4DNFI7H4II2V, 4DNFIBM714BP, 4DNFIA6NSSBJ, GSE155380, 4DNFIL9M97T2, Direct, 4DNFISPUVQHA, 4DNFIYIAUEPW, ENCSR244BBG, 4DNFIC3HAU11, 4DNFIQVMVRP6, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIFLJLIS5, 4DNFIHN2QSMX, 4DNFIH7TH4MF, 4DNFII84FBKM

Cohesin-loop subunit: Other

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000226935