Browse_each

Basic information

CohesinDB ID: CDBG00027058

Gene Symbol: AP000432.1

Ensembl ID: ENSG00000226956

Gene locus: chr21:17659275-17660384 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0405 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.980
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,HEK293T,IMR-90,K-562,MCF-10A,H1-hESC,HCC1599,HFF-hTERT,NaiveB,Aorta,HeLa-S3,H9-hESC,H1-Mesenchymal,H1-Mesendoderm

Cohesin-loop type: HiChIP,HiC,Direct

Cohesin-loop study: 4DNFI8649RQJ, 4DNFI3CFMRID, 4DNFIWZEN3FF, GSE43070, 4DNFIDJ2JZ7Q, 4DNFIE8E4ANZ, GSE108787, 4DNFIB7QTIMH, 4DNFIBN9K4V9, GSE84022, 4DNFIPV5KFMK, 4DNFIW8TIFI5, 4DNFI7H4II2V, 4DNFIBM714BP, 4DNFIV239W4L, GSE52457, 4DNFIM2BMJ33, Direct, 4DNFIXWCLD4M, GSE101921, GSE116872, 4DNFIZF1KI43, GSE44267, 4DNFIPAF4PYT, 4DNFIQVMVRP6, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, GSE105028, 4DNFIDBIEXI7, GSE58752

Cohesin-loop subunit: Other,SMC1

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000226956