Deatailed information for gene ENSG00000226983
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00027079
- Gene Symbol: LINC01692
- Ensembl ID: ENSG00000226983
-
Gene locus: chr21:24840549-25057746
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = 0.1164
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: H9-endodermal,IMR-90,MB157,Keratinocytes192627,GM12892,K1,Olfactory,Hepatocyte-H9,GM19239,GM12891,GM12878,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,LNCaP,SU-DHL-2,H9-hESC,KU-19-19,iPSC,REC-1,ARPE-19,H1-hESC,HCC1599,GM19238,Motor-Neuron,MSLCL,HUES64,SU-DHL-4,CyT49-hESC,NPC-H9,CyT49-endoderm,Skin-Fibroblast,CyT49-Gut,HFF-hTERT,HAP1
- Related loop:
chr21:18275000-18300000~~chr21:25025000-25050000,
chr21:21000000-21025000~~chr21:24875000-24900000,
chr21:21000000-21025000~~chr21:25000000-25025000,
chr21:21000000-21025000~~chr21:25025000-25050000,
chr21:22775000-22800000~~chr21:25025000-25050000,
chr21:23125000-23150000~~chr21:25025000-25050000,
chr21:23350000-23375000~~chr21:24975000-25000000,
chr21:23400000-23425000~~chr21:25025000-25050000,
chr21:24525000-24550000~~chr21:24875000-24900000,
chr21:24575000-24600000~~chr21:24875000-24900000,
chr21:24575000-24600000~~chr21:25025000-25050000,
chr21:24593668-24594925~~chr21:25038973-25040738,
chr21:24850000-24875000~~chr21:25525000-25550000,
chr21:24875000-24900000~~chr21:25025000-25050000,
chr21:24875000-24900000~~chr21:25300000-25325000,
chr21:24875000-24900000~~chr21:25325000-25350000,
chr21:24875000-24900000~~chr21:25350000-25375000,
chr21:24875000-24900000~~chr21:25375000-25400000,
chr21:24894830-24897390~~chr21:25038993-25040888,
chr21:24894830-24897390~~chr21:25215384-25217157,
chr21:24894830-24897390~~chr21:25312872-25315048,
chr21:24894830-24897390~~chr21:25384467-25387269,
chr21:24894830-24897394~~chr21:25039002-25040942,
chr21:24894830-24897394~~chr21:25312901-25315101,
chr21:24894830-24897394~~chr21:25385024-25387052,
chr21:24895174-24897331~~chr21:25312989-25315108,
chr21:24895217-24897409~~chr21:25038938-25040859,
chr21:24895217-24897409~~chr21:25384906-25387309,
chr21:24895246-24897306~~chr21:25385187-25387188,
chr21:24895257-24897346~~chr21:25038912-25040890,
chr21:24895257-24897346~~chr21:25312934-25315135,
chr21:24895257-24897346~~chr21:25384844-25387316,
chr21:24895308-24897338~~chr21:25038912-25040868,
chr21:24895365-24897344~~chr21:25313202-25314755,
chr21:24895401-24897292~~chr21:25385277-25387061,
chr21:24895404-24897444~~chr21:25038898-25041036,
chr21:24895404-24897444~~chr21:25312967-25315286,
chr21:24895404-24897444~~chr21:25384540-25387027,
chr21:24895412-24897320~~chr21:25039014-25040785,
chr21:24895412-24897320~~chr21:25215564-25217094,
chr21:24895412-24897320~~chr21:25312932-25315067,
chr21:24895412-24897374~~chr21:25038926-25041026,
chr21:24895412-24897374~~chr21:25312992-25315465,
chr21:24895412-24897374~~chr21:25384467-25386981,
chr21:24895417-24897339~~chr21:25313184-25314751,
chr21:24895417-24897339~~chr21:25385234-25387033,
chr21:24895431-24897310~~chr21:25038859-25040781,
chr21:24895431-24897366~~chr21:25038878-25040962,
chr21:24895431-24897366~~chr21:25312835-25315056,
chr21:24895431-24897366~~chr21:25384794-25387223,
chr21:24895435-24897297~~chr21:25385320-25387052,
chr21:24895436-24897312~~chr21:25038928-25040817,
chr21:24895436-24897312~~chr21:25385038-25387061,
chr21:24895439-24897330~~chr21:25039058-25040813,
chr21:24895454-24897237~~chr21:25312980-25314897,
chr21:24895454-24897362~~chr21:25313390-25314757,
chr21:24895454-24897362~~chr21:25385185-25387028,
chr21:24895469-24897373~~chr21:25039058-25040876,
chr21:24895469-24897373~~chr21:25312888-25315096,
chr21:24895473-24897247~~chr21:25039094-25040627,
chr21:24895480-24897346~~chr21:25313190-25314774,
chr21:24895510-24897368~~chr21:25038960-25041269,
chr21:24895510-24897368~~chr21:25312968-25315386,
chr21:24895510-24897368~~chr21:25384420-25387034,
chr21:24895560-24897204~~chr21:25038968-25040820,
chr21:24895560-24897204~~chr21:25313326-25315106,
chr21:24895563-24897074~~chr21:25313003-25315176,
chr21:24895582-24897226~~chr21:25313215-25314816,
chr21:24895582-24897226~~chr21:25384605-25386845,
chr21:24895665-24896948~~chr21:25039050-25040629,
chr21:24895738-24897210~~chr21:25038968-25040729,
chr21:24900000-24925000~~chr21:25300000-25325000,
chr21:24900000-24925000~~chr21:25375000-25400000,
chr21:24925000-24950000~~chr21:26150000-26175000,
chr21:24954838-24956486~~chr21:25297991-25299598,
chr21:25000000-25025000~~chr21:25200000-25225000,
chr21:25025000-25050000~~chr21:25175000-25200000,
chr21:25025000-25050000~~chr21:25250000-25275000,
chr21:25025000-25050000~~chr21:25300000-25325000,
chr21:25025000-25050000~~chr21:25350000-25375000,
chr21:25025000-25050000~~chr21:25375000-25400000,
chr21:25025000-25050000~~chr21:26825000-26850000,
chr21:25038878-25040962~~chr21:25384794-25387223,
chr21:25038898-25041036~~chr21:25312967-25315286,
chr21:25038960-25041269~~chr21:25312968-25315386,
chr21:25038960-25041269~~chr21:25384420-25387034,
chr21:25039015-25040833~~chr21:25282963-25284708,
chr21:25050000-25075000~~chr21:25300000-25325000,
chr21:25050000-25075000~~chr21:25375000-25400000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, 4DNFIQYQWPF5, GSE95015, GSE43070, GSE116875, 4DNFI5CGQ46V, 4DNFIMROE6N4, 4DNFIB7QTIMH, GSE116869, 4DNFI5SUHCGZ, ENCSR852KQC, GSE120294, 4DNFIILDWK8M, 4DNFIW8TIFI5, ENCSR410MDC, ENCSR478BMT, ENCSR732QOH, 4DNFIREVU1Z5, ENCSR113OIR, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIYD8LO9Z, ENCSR668RDP, ENCSR381DCY, 4DNFIBXWIH8J, 4DNFIJWBWE41, ENCSR981FNA, GSE97394, 4DNFIL9M97T2, ENCSR752QCX, ENCSR452NHL, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, ENCSR128RPG, 4DNFI9YAVTI1, 4DNFIIMZB6Y9, GSE80820, 4DNFI3A3VYWU, ENCSR658RQQ, ENCSR299VMZ, ENCSR314HAC, ENCSR479MTN, Direct, 4DNFISPUVQHA, 4DNFIX7H3CE2, 4DNFIYDBBSE3, 4DNFI1UEG1HD, 4DNFII84FBKM, GSE116872, 4DNFIEJEFCAM, 4DNFI9815EEJ, 4DNFIOCW5AEM, ENCSR305RTT, ENCSR404HWQ, 4DNFI9ZWZ5BS, ENCSR247RGI, ENCSR110JOO, 4DNFI2J1ODWB, 4DNFI5LCW273, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, ENCSR527RXH, 4DNFIFLJLIS5, 4DNFINEQY95T, 4DNFIDZT7PR8, 4DNFIQ2687RT, 4DNFIZGCA8AH, GSE105028, 4DNFIH7TH4MF, ENCSR033GUP
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .