Deatailed information for gene ENSG00000227075
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00027149
- Gene Symbol: AP000472.1
- Ensembl ID: ENSG00000227075
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Gene locus: chr21:21933314-21975681
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0397
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: RT-112,MCF-10A,H1-hESC,HFF-hTERT,HAP1,HFFc6,HeLa-S3,H9-hESC,H1-Mesendoderm
- Related loop:
chr21:21000000-21025000~~chr21:21925000-21950000,
chr21:21150000-21175000~~chr21:21925000-21950000,
chr21:21725000-21750000~~chr21:21925000-21950000,
chr21:21925000-21950000~~chr21:22100000-22125000,
chr21:21925000-21950000~~chr21:22175000-22200000,
chr21:21925000-21950000~~chr21:22350000-22375000,
chr21:21925000-21950000~~chr21:22775000-22800000,
chr21:21925000-21950000~~chr21:23375000-23400000,
chr21:21975000-22000000~~chr21:22350000-22375000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
4DNFIE8T8JZ8, GSE52457, 4DNFI3A3VYWU, 4DNFIEYQ5ZIR, 4DNFIVJ3IIQL, 4DNFII6AN691, Direct, 4DNFIJ8JKKWJ, 4DNFIMROE6N4, 4DNFIYD8LO9Z, GSE105028, 4DNFI5SUHCGZ, GSE101921, 4DNFIK61ILGM, GSE155380, 4DNFIEJEFCAM, 4DNFII84FBKM, 4DNFIZ4F74QR, 4DNFICEGAHRC
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .