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Basic information

CohesinDB ID: CDBG00027160

Gene Symbol: AP000402.1

Ensembl ID: ENSG00000227090

Gene locus: chr21:24886675-24902756 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.1189 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,MB157,Keratinocytes192627,GM12892,K1,Olfactory,Hepatocyte-H9,GM19239,GM12891,GM12878,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,LNCaP,SU-DHL-2,H9-hESC,KU-19-19,iPSC,REC-1,ARPE-19,H1-hESC,HCC1599,GM19238,Motor-Neuron,MSLCL,HUES64,SU-DHL-4,CyT49-hESC,NPC-H9,CyT49-endoderm,Skin-Fibroblast,CyT49-Gut,HFF-hTERT,HAP1

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIQYQWPF5, GSE95015, GSE43070, GSE116875, 4DNFI5CGQ46V, 4DNFIMROE6N4, 4DNFIB7QTIMH, GSE116869, 4DNFI5SUHCGZ, ENCSR852KQC, GSE120294, 4DNFIW8TIFI5, ENCSR410MDC, ENCSR732QOH, 4DNFIREVU1Z5, ENCSR113OIR, 4DNFII6AN691, 4DNFIKYXMF1E, 4DNFIYD8LO9Z, ENCSR668RDP, ENCSR381DCY, 4DNFIJWBWE41, ENCSR981FNA, GSE97394, 4DNFIL9M97T2, ENCSR752QCX, ENCSR452NHL, 4DNFIIMZB6Y9, 4DNFI1E6NJQJ, ENCSR128RPG, 4DNFI9YAVTI1, GSE80820, ENCSR658RQQ, ENCSR299VMZ, ENCSR314HAC, ENCSR479MTN, Direct, 4DNFIX7H3CE2, 4DNFIYDBBSE3, 4DNFI1UEG1HD, 4DNFII84FBKM, GSE116872, 4DNFIEJEFCAM, 4DNFI9815EEJ, 4DNFIOCW5AEM, ENCSR305RTT, ENCSR404HWQ, 4DNFI9ZWZ5BS, ENCSR247RGI, ENCSR110JOO, 4DNFI2J1ODWB, 4DNFI5LCW273, 4DNFIVJ3IIQL, 4DNFIJ8JKKWJ, ENCSR527RXH, 4DNFIFLJLIS5, 4DNFINEQY95T, 4DNFIDZT7PR8, 4DNFIQ2687RT, 4DNFIZGCA8AH, GSE105028, 4DNFIH7TH4MF, ENCSR033GUP

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000227090