Deatailed information for gene ENSG00000227256
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00027274
- Gene Symbol: MIS18A-AS1
- Ensembl ID: ENSG00000227256
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Gene locus: chr21:32277862-32280988
Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.3141
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.355
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: IMR-90,MCF-10A,MB157,Keratinocytes192627,H1-Mesenchymal,H1-Mesendoderm,Olfactory,MCF-7,SARS-Cov2-olfactory,GM12878,K-562,A-549,CyT49-pancreatic,HFFc6,PAEC,HeLa-S3,H1-Trophectoderm,H9-hESC,iPSC,REC-1,ARPE-19,HCT-116,OCI-AML-3,Hep-G2,Kelly,H1-hESC,HCC1599,Motor-Neuron,MSLCL,U-937,HUES64,CyT49-hESC,HUVEC,RT-112,CyT49-endoderm,CyT49-Gut,CC-2551,HAP1,HFF-hTERT
- Related loop:
chr21:29425000-29450000~~chr21:32275000-32300000,
chr21:31100000-31125000~~chr21:32250000-32275000,
chr21:31125000-31150000~~chr21:32275000-32300000,
chr21:31150000-31175000~~chr21:32250000-32275000,
chr21:31175000-31200000~~chr21:32250000-32275000,
chr21:31200000-31225000~~chr21:32250000-32275000,
chr21:31725000-31750000~~chr21:32250000-32275000,
chr21:31750000-31775000~~chr21:32250000-32275000,
chr21:31775000-31800000~~chr21:32250000-32275000,
chr21:31785218-31787331~~chr21:32277768-32279016,
chr21:31825000-31850000~~chr21:32250000-32275000,
chr21:31850000-31875000~~chr21:32250000-32275000,
chr21:31850000-31875000~~chr21:32275000-32300000,
chr21:31875000-31900000~~chr21:32250000-32275000,
chr21:31950000-31975000~~chr21:32250000-32275000,
chr21:31975000-32000000~~chr21:32250000-32275000,
chr21:32000000-32025000~~chr21:32250000-32275000,
chr21:32050000-32075000~~chr21:32250000-32275000,
chr21:32075000-32100000~~chr21:32250000-32275000,
chr21:32100000-32125000~~chr21:32250000-32275000,
chr21:32125000-32150000~~chr21:32250000-32275000,
chr21:32250000-32275000~~chr21:32550000-32575000,
chr21:32275000-32300000~~chr21:32550000-32575000,
chr21:32275000-32300000~~chr21:32575000-32600000,
chr21:32275000-32300000~~chr21:32600000-32625000,
chr21:32277555-32280325~~chr21:32599877-32601833,
chr21:32277665-32280330~~chr21:32599933-32601810,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFIQYQWPF5, GSE95015, GSE43070, 4DNFIDJ2JZ7Q, 4DNFITUOMFUQ, ENCSR794RDS, 4DNFIBN9K4V9, ENCSR852KQC, 4DNFIDSWKFF5, 4DNFIZ4F74QR, 4DNFI7H4II2V, ENCSR350NJV, 4DNFIEYQ5ZIR, 4DNFIREVU1Z5, 4DNFIA6NSSBJ, 4DNFIKYXMF1E, 4DNFIRKGMZRQ, ENCSR668RDP, GSE97394, 4DNFICEGAHRC, 4DNFI1E6NJQJ, 4DNFI9YAVTI1, 4DNFI6XD6JAQ, 4DNFIK61ILGM, GSE116872, 4DNFIAWVDQ8C, ENCSR305RTT, 4DNFI7XAZNNQ, GSE105028, 4DNFIBKZK63V, 4DNFIQWD8ZYD, ENCSR662QKG, GSE94872, ENCSR499RVD, 4DNFIB7QTIMH, GSE126792, 4DNFIOX3BGNE, GSE155380, 4DNFIJWBWE41, 4DNFICSTCJQZ, ENCSR452NHL, 4DNFIIMZB6Y9, GSE80820, GSE52457, Direct, 4DNFIAS8LV1C, 4DNFIX7H3CE2, 4DNFIYIAUEPW, ENCSR244BBG, 4DNFI9815EEJ, 4DNFI9ZWZ5BS, 4DNFIVJ3IIQL, 4DNFI2J1ODWB, 4DNFIQ2687RT, 4DNFIFLJLIS5, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIS5F6EBL, 4DNFIZGCA8AH, 4DNFIH7TH4MF, 4DNFIWZEN3FF, ENCSR194SRI, 4DNFIR8OU6QJ, 4DNFI6CWNUFL, 4DNFI5CGQ46V, 4DNFIE8E4ANZ, GSE120294, 4DNFIPV5KFMK, 4DNFIW8TIFI5, ENCSR410MDC, 4DNFIMEG1QIC, 4DNFIF2D3TL9, 4DNFIYD8LO9Z, 4DNFIL9M97T2, ENCSR550JLK, 4DNFI3A3VYWU, 4DNFIJ7OAIFQ, 4DNFIM2BMJ33, GSE165038, 4DNFIALNLR78, 4DNFIYDBBSE3, ENCSR379CII, 4DNFIEJEFCAM, ENCSR393LOP, 4DNFIJ8JKKWJ, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR094EIC, GSE116869, 4DNFI8649RQJ, GSE116875, 4DNFIMROE6N4, GSE108787, 4DNFI5SUHCGZ, ENCSR545YBD, ENCSR866FWQ, 4DNFI6EIFUZI, 4DNFII6AN691, GSE111537, 4DNFIV239W4L, 4DNFIOUSETUP, 4DNFISTWNV9C, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, GSE101921, ENCSR228TUX, 4DNFI8JFOAJT, 4DNFIOCW5AEM, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR110JOO, 4DNFI5LCW273, 4DNFINEQY95T, 4DNFIHN2QSMX, 4DNFII84FBKM, 4DNFIVSCH2CH
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .