Deatailed information for gene ENSG00000227330
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00027320
- Gene Symbol: AF130417.1
- Ensembl ID: ENSG00000227330
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Gene locus: chr21:18022369-18114904
Strand: -
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0134
FDR = 0.0863
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: MCF-7,HEK293T,NCI-H1437,NPC-H9,Kelly,H1-hESC,HCC1599,HFF-hTERT,HAP1,Jurkat,PAEC,HeLa-S3,H9-hESC,H1-Mesenchymal,H1-Mesendoderm,HUES64,SU-DHL-4,HUVEC
- Related loop:
chr21:13450000-13475000~~chr21:18100000-18125000,
chr21:17650000-17675000~~chr21:18000000-18025000,
chr21:17650000-17675000~~chr21:18050000-18075000,
chr21:17675000-17700000~~chr21:18025000-18050000,
chr21:17675000-17700000~~chr21:18100000-18125000,
chr21:17775000-17800000~~chr21:18100000-18125000,
chr21:17825000-17850000~~chr21:18000000-18025000,
chr21:17925000-17950000~~chr21:18025000-18050000,
chr21:18000000-18025000~~chr21:18225000-18250000,
chr21:18000000-18025000~~chr21:18500000-18525000,
chr21:18000000-18025000~~chr21:20800000-20825000,
chr21:18025000-18050000~~chr21:18175000-18200000,
chr21:18025000-18050000~~chr21:18200000-18225000,
chr21:18025000-18050000~~chr21:18225000-18250000,
chr21:18025000-18050000~~chr21:18250000-18275000,
chr21:18025000-18050000~~chr21:18350000-18375000,
chr21:18040096-18042223~~chr21:18204238-18205925,
chr21:18040096-18042223~~chr21:18368086-18370037,
chr21:18040191-18042074~~chr21:18265543-18266810,
chr21:18040385-18042120~~chr21:18204504-18205995,
chr21:18040385-18042120~~chr21:18264749-18266732,
chr21:18040385-18042120~~chr21:18368469-18370118,
chr21:18040504-18041951~~chr21:18204494-18205803,
chr21:18040579-18041906~~chr21:18204448-18205978,
chr21:18040589-18041899~~chr21:18368433-18370077,
chr21:18040618-18041839~~chr21:18368630-18369881,
chr21:18050000-18075000~~chr21:18225000-18250000,
chr21:18100000-18125000~~chr21:18250000-18275000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
4DNFI8649RQJ, GSE94872, 4DNFIE8E4ANZ, GSE108787, ENCSR361AYD, GSE103148, 4DNFI7H4II2V, 4DNFIYD8LO9Z, ENCSR668RDP, GSE97394, ENCSR587DSF, GSE52457, ENCSR658RQQ, Direct, 4DNFI6XD6JAQ, 4DNFISPUVQHA, GSE116872, GSE44267, 4DNFIAWVDQ8C, 4DNFIQVMVRP6, ENCSR247RGI, 4DNFIFI6NIKJ, GSE105028, ENCSR833CMG
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .