Deatailed information for gene ENSG00000227342

Check detailed explainations here

  • Basic information
  • CohesinDB ID: CDBG00027327
  • Gene Symbol: LINC00307
  • Ensembl ID: ENSG00000227342
  • Gene locus: chr21:30209150-30211783 Strand: -
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0809 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): 0.981
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: iPSC,NPC-H9,HT-1197,HFFc6,K1,LNCaP
  • Related loop: chr21:27500000-27525000~~chr21:30200000-30225000, chr21:29925000-29950000~~chr21:30200000-30225000, chr21:30208954-30210477~~chr21:30257090-30259197, chr21:30208982-30210528~~chr21:30257106-30259191, chr21:30208984-30210508~~chr21:30257092-30259179, chr21:30209042-30210435~~chr21:30257097-30258737, chr21:30215629-30216899~~chr21:30227096-30228600,
  • Cohesin-loop type: HiC,Direct,ChIAPET
  • Cohesin-loop study: ENCSR247RGI, ENCSR113OIR, Direct, ENCSR314HAC, 4DNFIFLJLIS5, ENCSR386KHY, 4DNFI5SUHCGZ, 4DNFIVSCH2CH
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
eachgene