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Basic information

CohesinDB ID: CDBG00027373

Gene Symbol: RNF6P1

Ensembl ID: ENSG00000227406

Gene locus: chr21:39373762-39377066 Strand: -

Gene type: processed_pseudogene

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.0548 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: TAMR-MCF7,K1,MCF-7,GM12878,A-549,HFFc6,PAEC,HeLa-S3,SU-DHL-2,KU-19-19,H9-hESC,NCI-H1437,ARPE-19,HCT-116,Hep-G2,H1-hESC,HT-1376,HFF-hTERT,HAP1,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: ENCSR662QKG, GSE95015, 4DNFIBRSIPE4, 4DNFI5CGQ46V, 4DNFIMROE6N4, GSE118716, ENCSR499RVD, 4DNFI5SUHCGZ, ENCSR146FPM, ENCSR410MDC, 4DNFIYD8LO9Z, GSE99541, ENCSR668RDP, ENCSR981FNA, ENCSR123UVP, 4DNFICEGAHRC, GSE80820, 4DNFIE8T8JZ8, 4DNFI1E6NJQJ, ENCSR128RPG, 4DNFI9YAVTI1, Direct, ENCSR314HAC, 4DNFISPUVQHA, 4DNFIAS8LV1C, 4DNFI6JJQKFJ, 4DNFI1UEG1HD, 4DNFIK61ILGM, 4DNFIYIAUEPW, ENCSR244BBG, ENCSR393LOP, ENCSR404HWQ, 4DNFI9ZWZ5BS, ENCSR110JOO, 4DNFIE5TEYK7, 4DNFIP71EWXC, ENCSR933UZH, ENCSR833CMG, 4DNFIZGCA8AH, GSE105028, 4DNFII84FBKM

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000227406