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Basic information

CohesinDB ID: CDBG00027395

Gene Symbol: AP001471.1

Ensembl ID: ENSG00000227438

Gene locus: chr21:46093263-46097530 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction,

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.3919 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.633
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: IMR-90,TAMR-MCF7,K1,H1-Mesenchymal,H1-Mesendoderm,Hepatocyte-H9,MCF-7,HEK293T,K-562,A-549,HFFc6,HeLa-S3,H1-Trophectoderm,H9-hESC,iPSC,Hep-G2,H1-hESC,HCC1599,Motor-Neuron,HUES64,HUVEC,NPC-H9,CyT49-endoderm,Skin-Fibroblast,CC-2551,HFF-hTERT,MCF7-FASR

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFI8649RQJ, 4DNFIQYQWPF5, 4DNFI3CFMRID, ENCSR662QKG, 4DNFIWZEN3FF, ENCSR194SRI, GSE43070, 4DNFI6CWNUFL, GSE94872, 4DNFIMROE6N4, GSE118716, 4DNFIE8E4ANZ, ENCSR499RVD, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFI5SUHCGZ, ENCSR852KQC, GSE120294, 4DNFIILDWK8M, 4DNFI7H4II2V, 4DNFIOX3BGNE, 4DNFIW8TIFI5, 4DNFIZ4F74QR, 4DNFIMEG1QIC, ENCSR732QOH, 4DNFIBM714BP, 4DNFIA6NSSBJ, 4DNFIREVU1Z5, 4DNFII6AN691, 4DNFIL5K3MA1, ENCSR381DCY, 4DNFIJWBWE41, 4DNFICSTCJQZ, 4DNFIV239W4L, GSE97394, 4DNFIOUSETUP, 4DNFIIMZB6Y9, GSE52457, Direct, ENCSR314HAC, 4DNFI6XD6JAQ, 4DNFISPUVQHA, 4DNFIYDBBSE3, 4DNFI8Y9SRP2, 4DNFIYIAUEPW, ENCSR244BBG, GSE116872, 4DNFI8JFOAJT, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, 4DNFIC3HAU11, 4DNFIQVMVRP6, ENCSR305RTT, ENCSR247RGI, ENCSR338WUS, 4DNFI2J1ODWB, 4DNFI5LCW273, 4DNFIVJ3IIQL, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, 4DNFIFLJLIS5, GSE105028, 4DNFIDBIEXI7, 4DNFIDZT7PR8, 4DNFIBKZK63V, 4DNFIH7TH4MF, 4DNFII84FBKM, 4DNFIVSCH2CH

Cohesin-loop subunit: SMC1,CTCF,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

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Deatailed information for gene ENSG00000227438