Deatailed information for gene ENSG00000227456
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00027406
- Gene Symbol: LINC00310
- Ensembl ID: ENSG00000227456
- Gene locus: chr21:34157723-34188917 Strand: +
- Gene type: lncRNA
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction,
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.3534
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information) - Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): 0.644
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60 -
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90 - Whether has cohesin-loop: True
- Involved cell types for loop evidence: MCF-7,iPSC,HCT-116,GM12878,K-562,H1-hESC,Motor-Neuron,HFF-hTERT,HFFc6,HeLa-S3,H9-hESC
- Related loop: chr21:33675000-33700000~~chr21:34150000-34175000, chr21:33900000-33925000~~chr21:34175000-34200000, chr21:34075000-34100000~~chr21:34175000-34200000, chr21:34150000-34175000~~chr21:34250000-34275000, chr21:34150000-34175000~~chr21:34325000-34350000, chr21:34150000-34175000~~chr21:34525000-34550000, chr21:34150000-34175000~~chr21:34600000-34625000, chr21:34150000-34175000~~chr21:34650000-34675000, chr21:34150000-34175000~~chr21:42625000-42650000, chr21:34175000-34200000~~chr21:34325000-34350000, chr21:34175000-34200000~~chr21:34500000-34525000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop subunit: CTCF,Other,Rad21
- Cohesin-DEGs evidence
Tools:
- Assay
