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Basic information

CohesinDB ID: CDBG00027563

Gene Symbol: AP001619.1

Ensembl ID: ENSG00000227698

Gene locus: chr21:41874755-41877613 Strand: -

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction,

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = 0.3138 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.393
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: SARS-Cov2-olfactory,GM12878,Germinal-Center-B,NPC-H9,K-562,RT-112,MB157,H1-hESC,A-549,HFF-hTERT,HAP1,HT-1376,MCF7-FASR,Motor-Neuron,HeLa-S3,H9-hESC,Olfactory,SU-DHL-4

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: GSE95015, 4DNFIWZEN3FF, 4DNFIBRSIPE4, GSE118716, 4DNFIE8E4ANZ, 4DNFIBN9K4V9, GSE84022, 4DNFIPV5KFMK, 4DNFIILDWK8M, 4DNFIW8TIFI5, ENCSR866FWQ, 4DNFI6EIFUZI, 4DNFIF2D3TL9, 4DNFIREVU1Z5, GSE155380, ENCSR981FNA, 4DNFI9YAVTI1, 4DNFIBT4EAKN, ENCSR658RQQ, 4DNFIM2BMJ33, Direct, 4DNFIBY3UHJB, ENCSR244BBG, 4DNFIPAF4PYT, 4DNFIQVMVRP6, ENCSR247RGI, 4DNFIFI6NIKJ, 4DNFIDKJFK2S, ENCSR933UZH, GSE105028, 4DNFIDBIEXI7, GSE116869

Cohesin-loop subunit: SMC1,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000227698