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Basic information

CohesinDB ID: CDBG00027565

Gene Symbol: LINC00111

Ensembl ID: ENSG00000227702

Gene locus: chr21:41679180-41697336 Strand: +

Gene type: lncRNA

Double-evidenced cohesin related CRMs

Whether cohesin-related CRMs (double-evidenced): False

All evidenced type: Interaction

Regulatory cohesin (double-evidenced):

Co-expression with cohesin genes Rho = -0.0325 FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)

Tissue specificity

Gene expression across tissues (TPM):

Tissue specificity of gene (Gini-coefficient): 0.962
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60

Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90

Cohesin-loop evidence

Whether has cohesin-loop: True

Involved cell types for loop evidence: MCF-7,GM12878,Hep-G2,TAMR-MCF7,H1-hESC,A-549,HFF-hTERT,HT-1376,HFFc6,MCF7-FASR,HeLa-S3,H9-hESC,SU-DHL-4

Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET

Cohesin-loop study: 4DNFIE8T8JZ8, ENCSR393LOP, ENCSR255XYX, ENCSR658RQQ, ENCSR194SRI, 4DNFI2J1ODWB, 4DNFIZ95S6TR, Direct, GSE118716, ENCSR933UZH, 4DNFI15FPSQL, 4DNFIBY3UHJB, 4DNFI1UEG1HD, 4DNFINW9P6XF, GSE120294, 4DNFIBKZK63V, 4DNFICSTCJQZ, 4DNFII84FBKM, ENCSR410MDC

Cohesin-loop subunit: SMC1,Other,Rad21

Cohesin-DEGs evidence

Whether cohesin DEGs: False

Involved cell types for DEG evidence:

Cohesin-DEGs, number of studies: 0

Cohesin-DEGs, study: .

Cohesin-DEGs, subunit: .

eachgene

Deatailed information for gene ENSG00000227702