Deatailed information for gene ENSG00000227716

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  • Basic information
  • CohesinDB ID: CDBG00027577
  • Gene Symbol: AP000459.1
  • Ensembl ID: ENSG00000227716
  • Gene locus: chr21:23477640-23490724 Strand: +
  • Gene type: lncRNA
  • Double-evidenced cohesin related CRMs
  • Whether cohesin-related CRMs (double-evidenced): False
  • All evidenced type: Interaction
  • Regulatory cohesin (double-evidenced):
  • Co-expression with cohesin genes Rho = 0.0790 FDR = 0.0000
    (Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
  • Tissue specificity
  • Gene expression across tissues (TPM):
  • Tissue specificity of gene (Gini-coefficient): -0.000
    0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
  • Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
    0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
  • Cohesin-loop evidence
  • Whether has cohesin-loop: True
  • Involved cell types for loop evidence: HEK293T,K-562,H1-hESC,HFF-hTERT,Right-Ventricle,HeLa-S3,H9-hESC,H1-Mesenchymal,H1-Mesendoderm
  • Related loop: chr21:21600000-21625000~~chr21:23475000-23500000, chr21:23100000-23125000~~chr21:23475000-23500000, chr21:23150000-23175000~~chr21:23475000-23500000, chr21:23350000-23375000~~chr21:23475000-23500000, chr21:23375000-23400000~~chr21:23475000-23500000, chr21:23450000-23475000~~chr21:23725000-23750000, chr21:23475000-23500000~~chr21:23700000-23725000,
  • Cohesin-loop type: HiChIP,HiC,Direct
  • Cohesin-loop study: GSE44267, 4DNFI8649RQJ, GSE52457, GSE87112, GSE43070, 4DNFI6XD6JAQ, Direct, 4DNFIDJ2JZ7Q, 4DNFIFI6NIKJ, GSE105028, 4DNFIDBIEXI7, 4DNFIW8TIFI5, 4DNFI7H4II2V
  • Cohesin-loop subunit: Other,Rad21
  • Cohesin-DEGs evidence
  • Whether cohesin DEGs: False
  • Involved cell types for DEG evidence:
  • Cohesin-DEGs, number of studies: 0
  • Cohesin-DEGs, study: .
  • Cohesin-DEGs, subunit: .
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