Deatailed information for gene ENSG00000227721
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00027581
- Gene Symbol: RPSAP64
- Ensembl ID: ENSG00000227721
-
Gene locus: chr21:38894916-38895252
Strand: +
- Gene type: processed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
-
Co-expression with cohesin genes Rho = -0.0944
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
-
Gene expression across tissues (TPM):
-
Tissue specificity of gene (Gini-coefficient): 0.981
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
-
Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
-
Involved cell types for loop evidence: IMR-90,MCF-10A,TAMR-MCF7,Keratinocytes192627,H1-Mesendoderm,Olfactory,MCF-7,HEK293T,SARS-Cov2-olfactory,K-562,A-549,HeLa-S3,H1-Trophectoderm,H9-hESC,Liver,H1-hESC,Motor-Neuron,BMEC,SU-DHL-4,RT-112,CC-2551,MCF7-FASR
- Related loop:
chr21:38450000-38475000~~chr21:38900000-38925000,
chr21:38475000-38500000~~chr21:38875000-38900000,
chr21:38500000-38525000~~chr21:38900000-38925000,
chr21:38525000-38550000~~chr21:38875000-38900000,
chr21:38725000-38750000~~chr21:38875000-38900000,
chr21:38725000-38750000~~chr21:38900000-38925000,
chr21:38800000-38825000~~chr21:38900000-38925000,
chr21:38860970-38863732~~chr21:38897047-38898311,
chr21:38875000-38900000~~chr21:39025000-39050000,
chr21:38875000-38900000~~chr21:39050000-39075000,
chr21:38875000-38900000~~chr21:39100000-39125000,
chr21:38875000-38900000~~chr21:39150000-39175000,
chr21:38897047-38898311~~chr21:39016372-39018255,
chr21:38900000-38925000~~chr21:39000000-39025000,
chr21:38900000-38925000~~chr21:39025000-39050000,
chr21:38900000-38925000~~chr21:39050000-39075000,
chr21:38900000-38925000~~chr21:39075000-39100000,
chr21:38900000-38925000~~chr21:39125000-39150000,
chr21:38900000-38925000~~chr21:39375000-39400000,
- Cohesin-loop type: HiChIP,HiC,Direct,ChIAPET
- Cohesin-loop study:
ENCSR662QKG, GSE118716, ENCSR499RVD, GSE108787, GSE120294, 4DNFI7H4II2V, 4DNFIMEG1QIC, 4DNFI6EIFUZI, GSE155380, 4DNFIV239W4L, 4DNFICEGAHRC, 4DNFIL9M97T2, 4DNFIE8T8JZ8, GSE52457, ENCSR507AHE, 4DNFIJ7OAIFQ, ENCSR658RQQ, 4DNFI6XD6JAQ, Direct, 4DNFIAS8LV1C, 4DNFIBY3UHJB, 4DNFIX7H3CE2, GSE101921, GSE108869, ENCSR244BBG, 4DNFIZF1KI43, ENCSR393LOP, GSE44267, 4DNFIPAF4PYT, 4DNFIQVMVRP6, ENCSR305RTT, 4DNFIE5TEYK7, 4DNFIVJ3IIQL, 4DNFIDKJFK2S, GSE105028, 4DNFIDBIEXI7, 4DNFIS5F6EBL, GSE58752, 4DNFIH7TH4MF
- Cohesin-loop subunit: SMC1,CTCF,Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
-
Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .