Deatailed information for gene ENSG00000227840
Check detailed explainations here
- Basic information
- CohesinDB ID: CDBG00027652
- Gene Symbol: KRTAP8-3P
- Ensembl ID: ENSG00000227840
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Gene locus: chr21:30806931-30807119
Strand: -
- Gene type: unprocessed_pseudogene
- Double-evidenced cohesin related CRMs
- Whether cohesin-related CRMs (double-evidenced): False
- All evidenced type: Interaction
- Regulatory cohesin (double-evidenced):
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Co-expression with cohesin genes Rho = 0.0480
FDR = 0.0000
(Note: Cohesin does not need to 'co-express' with its regulated genes because expression of cohesin genes in conserved. The co-expression only provides addtional information)
- Tissue specificity
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Gene expression across tissues (TPM):
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Tissue specificity of gene (Gini-coefficient): -0.000
0:Conserved; 1:Tissue-specific For all genes: quantile-25%: 0.26, quantile-50%: 0.36 'quantile-75%': 0.60
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Cell Specificity of regulatory cohesin (1:Tissue-specific; 0:Conserved): nan
0:Conserved; 1:Tissue-specific. For all cohesin sites: quantile-25%: 0.82, quantile-50%: 0.86 'quantile-75%': 0.90
- Cohesin-loop evidence
- Whether has cohesin-loop: True
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Involved cell types for loop evidence: H1-hESC,HFF-hTERT,HeLa-S3,H9-hESC,H1-Mesendoderm
- Related loop:
chr21:30325000-30350000~~chr21:30800000-30825000,
chr21:30500000-30525000~~chr21:30800000-30825000,
chr21:30675000-30700000~~chr21:30800000-30825000,
chr21:30800000-30825000~~chr21:31025000-31050000,
- Cohesin-loop type: HiChIP,HiC,Direct
- Cohesin-loop study:
GSE52457, 4DNFIBM714BP, GSE43070, 4DNFIVJ3IIQL, 4DNFI6XD6JAQ, Direct, 4DNFIDJ2JZ7Q, 4DNFIFI6NIKJ, 4DNFIE8E4ANZ, GSE105028, 4DNFIB7QTIMH, 4DNFIBN9K4V9, 4DNFIW8TIFI5
- Cohesin-loop subunit: Other,Rad21
- Cohesin-DEGs evidence
- Whether cohesin DEGs: False
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Involved cell types for DEG evidence:
- Cohesin-DEGs, number of studies: 0
- Cohesin-DEGs, study: .
- Cohesin-DEGs, subunit: .